PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462895043
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ERF
Protein Properties Length: 205aa    MW: 22483.2 Da    PI: 9.5895
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462895043genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.72.4e-172272155
        AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
               ++y+GVr+++ +grW+AeIrdp+    + +r +lg++ t+e+Aa+a+++ +++++g
  462895043 22 KKYRGVRYRS-SGRWAAEIRDPR----QgRRAWLGTYCTPEDAARAYDREARRIRG 72
               59******99.7*********94....25************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.37E-272280No hitNo description
PROSITE profilePS5103221.7462380IPR001471AP2/ERF domain
SMARTSM003802.8E-322386IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-202381IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.1E-282380IPR001471AP2/ERF domain
PfamPF008473.9E-102372IPR001471AP2/ERF domain
PRINTSPR003679.2E-72435IPR001471AP2/ERF domain
PRINTSPR003679.2E-74662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
TSVAVPSSPT KRRGAAARPG PKKYRGVRYR SSGRWAAEIR DPRQGRRAWL GTYCTPEDAA  60
RAYDREARRI RGKSARLNFP LPNEGRHQHP PPATIDLNLP AVDSDDHDLH SAAGHDTTMD  120
VDTDAGNVCH AAESTLMRIR ELITQSQGPR DERLASVVSE LMNGGGIRSE ARAAGALLIS  180
ECSQQMEQIA ALKRDLEKRE AQLVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-172281464ATERF1
3gcc_A2e-172281464ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462895043
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0370719e-58BT037071.1 Zea mays full-length cDNA clone ZM_BFb0153L12 mRNA, complete cds.
GenBankKJ7275489e-58KJ727548.1 Zea mays clone pUT5408 AP2-EREBP transcription factor (EREB179) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985472.13e-63ethylene-responsive transcription factor RAP2-12
TrEMBLK4ACP01e-61K4ACP0_SETIT; Uncharacterized protein
TrEMBLK4ADI18e-62K4ADI1_SETIT; Uncharacterized protein
STRINGSi036647m3e-62(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP136642229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.37e-16ERF family protein