PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462895058

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

Protein Properties

Length: 236aa MW: 26582.5 Da PI: 9.729

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462895058	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	51.6	1.7e-16	136	226	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 f+k++++s+v + +l lp f+++++ k ++ +tl de+g++++ ++ ++++ l++GW +F+ ++g+++gD vF+l++ ++f +v+++r+ 462895058 136 FVKAMLHSHVVRGFWLGLPSYFCDTYMPK--QDSIITLVDEKGEEFDTNY--LAYKKG--LSGGWAGFALSHGIRDGDATVFQLIKPTTF--KVHIIRA 226 89**********************744..5669***********..555555..9*********************986777..9999885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	4.2E-19	127	226	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	9.61E-23	129	225	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.12E-24	134	225	No hit	No description
PROSITE profile	PS50863	12.139	136	227	IPR003340	B3 DNA binding domain
Pfam	PF02362	9.8E-15	136	226	IPR003340	B3 DNA binding domain
SMART	SM01019	2.2E-17	136	227	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MGVVAEQGMS AYEAARERTV QENKRKIEEL NLYHLSAAIK APKTPSPMKQ KRRRIIDAAV 60 VAPSPIRRSR RLAKLPEVKY AELGPHTSER MTRSPRKPTD SIYLARYGSI SMKARLEATR 120 KAEELESQMD PEIPSFVKAM LHSHVVRGFW LGLPSYFCDT YMPKQDSIIT LVDEKGEEFD 180 TNYLAYKKGL SGGWAGFALS HGIRDGDATV FQLIKPTTFK VHIIRAAIDD DSEVAE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	50	54	KRRRI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462895058

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025797698.1	1e-145	B3 domain-containing protein Os03g0184500-like
Swissprot	Q10QS9	1e-138	Y3845_ORYSJ; B3 domain-containing protein Os03g0184500
TrEMBL	A0A2T7CGW7	1e-144	A0A2T7CGW7_9POAL; Uncharacterized protein
STRING	Si037266m	1e-141	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1756	38	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	6e-53	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]