PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462895064
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family GATA
Protein Properties Length: 107aa    MW: 11534.6 Da    PI: 6.4967
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462895064genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA41.71.6e-132862133
       GATA  1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkk 33
               C  Cg +   Tp++Rrgp+g +tLCnaCG+ ++k 
  462895064 28 CLRCGISAnaTPHMRRGPEGRRTLCNACGIAWAKD 62
               6667766667**********************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.5E-52275IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.09E-92263No hitNo description
Gene3DG3DSA:3.30.50.103.5E-122662IPR013088Zinc finger, NHR/GATA-type
PfamPF003202.7E-112862IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 107 aa     Download sequence    Send to blast
MQFDDERDTG VGGGNGEIDD RVDEPTRCLR CGISANATPH MRRGPEGRRT LCNACGIAWA  60
KDSSVSSFHR NGPHGGAQGD QDYTPLAGMQ QQQFLGNFHL SNGTISK
Cis-element ? help Back to Top
SourceLink
PlantRegMap462895064
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021301556.12e-34protein FAR1-RELATED SEQUENCE 5 isoform X1
RefseqXP_021301561.12e-34protein FAR1-RELATED SEQUENCE 5 isoform X1
RefseqXP_021301564.12e-34protein FAR1-RELATED SEQUENCE 5 isoform X1
RefseqXP_021301566.12e-34protein FAR1-RELATED SEQUENCE 5 isoform X2
TrEMBLA0A0E0GHR57e-46A0A0E0GHR5_ORYNI; Uncharacterized protein
TrEMBLA0A0E0NQK52e-46A0A0E0NQK5_ORYRU; Uncharacterized protein
STRINGORUFI03G05800.14e-47(Oryza rufipogon)
STRINGONIVA03G05970.11e-46(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150391318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.24e-12ZIM-like 1