PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462895115
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family G2-like
Protein Properties Length: 274aa    MW: 30223.3 Da    PI: 9.2455
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462895115genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like107.29.3e-342680155
    G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
               kprlrWtp+LHerFveav++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYRl
  462895115 26 KPRLRWTPDLHERFVEAVTKLGGPDKATPKSVLRLMGMKGLTLYHLKSHLQKYRL 80
               79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.9E-332381IPR009057Homeodomain-like
PROSITE profilePS5129414.0322383IPR017930Myb domain
TIGRFAMsTIGR015578.5E-252681IPR006447Myb domain, plants
SuperFamilySSF466899.32E-172683IPR009057Homeodomain-like
PfamPF002498.3E-102879IPR001005SANT/Myb domain
PfamPF143795.1E-24125169IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MFEGMERAGY GAAAAMGGIV LSRDPKPRLR WTPDLHERFV EAVTKLGGPD KATPKSVLRL  60
MGMKGLTLYH LKSHLQKYRL GKQNKKDTGL EASRGAFAAQ GINFATPAPP SIPSAASNNT  120
GETPLADALK YQIEVQRKLH EQLEVQKKLQ MRIEAQGKYL QNILEKAQNN LSYDAGAANL  180
EATRSQLTDF NLALSGFMDN VTQVCEQNNG ELTKAISEDN LRASNLGFQL YHGVQHVEDV  240
KCTPDDGLLL LDLNIRGGYG HRSSSDLKIN HHMR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A3e-212682157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-212682157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-212682157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-212682157Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00544DAPTransfer from AT5G45580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462895115
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953575.11e-179myb family transcription factor PHL11
TrEMBLK3YUV31e-178K3YUV3_SETIT; Uncharacterized protein
STRINGSi018049m1e-178(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39403470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45580.11e-64G2-like family protein