PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462895467
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family WRKY
Protein Properties Length: 250aa    MW: 27627 Da    PI: 5.6454
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462895467genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.81.7e-31114170360
                -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
       WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                DgynWrKYGqK+vkgsefprsYY+Ct+++Cpvk+kve++  ++++ ei+Y+geHnh+k
  462895467 114 DGYNWRKYGQKKVKGSEFPRSYYKCTHPSCPVKRKVETTI-EGQIAEIVYSGEHNHPK 170
                9***************************************.***************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.0E-27107170IPR003657WRKY domain
PROSITE profilePS5081121.551107171IPR003657WRKY domain
SuperFamilySSF1182902.09E-24108170IPR003657WRKY domain
SMARTSM007741.7E-32112170IPR003657WRKY domain
PfamPF031062.2E-24114169IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MQDHEKTAAL KPVASRPFST SRSFSKRLQD FSATDSRPVT IPEETSIIRP KITRLTPLPS  60
DLPTEISATI DAGSGNILEE MEVDTEQVVS CDPLTTCDAV RKPVGSVKNN LSYDGYNWRK  120
YGQKKVKGSE FPRSYYKCTH PSCPVKRKVE TTIEGQIAEI VYSGEHNHPK LHPPRKPSSS  180
TSTEVAVADL HDTSNVEAEI QIVGHNQFPD ITVTTSGGTI LVTMEESEVL VEVSSMVGEF  240
MEDASKDMRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-161141681671WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462895467
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819931.11e-92probable WRKY transcription factor 3
RefseqXP_025819932.11e-92probable WRKY transcription factor 3
TrEMBLA0A0A9G2V51e-105A0A0A9G2V5_ARUDO; WRKY3
STRINGPavir.Fa00406.1.p2e-84(Panicum virgatum)
STRINGSi014939m4e-86(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23252941
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.26e-32WRKY family protein