PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462895668

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

bHLH

Protein Properties

Length: 142aa MW: 15083.1 Da PI: 11.2541

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462895668	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	25.8	1.9e-08	39	79	9	54
HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 r+RR+ri +++ L++l+P a K++ a++L +A +Y++ L 462895668 39 ARQRRERISERLRVLQKLVPGgA------KMDTASMLDEAANYLRFL 79 69****************966......*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.869	30	79	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.0E-13	36	85	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.35E-11	36	84	No hit	No description
SuperFamily	SSF47459	2.49E-14	36	90	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.0E-12	38	88	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.0E-5	39	79	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 142 aa Download sequence Send to blast
MRPVSLGPGA GDEELQAAAG ERPRRRNVRI SSDPQTVAAR QRRERISERL RVLQKLVPGG 60 AKMDTASMLD EAANYLRFLK SQVRELQTLD RRNYGSNAVM AGGPAVSFNG GNGVPPFAFP 120 GPAAAETLRG GLAAGGGVEQ QI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	39	44	RQRRER

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462895668

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP003141	1e-74	AP003141.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0002B05.
GenBank	AP003296	1e-74	AP003296.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0697C12.
GenBank	AP014957	1e-74	AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBank	CP012609	1e-74	CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002458018.1	2e-54	putative lysozyme-like protein
Refseq	XP_021311497.1	2e-54	putative lysozyme-like protein
Swissprot	Q8S3D2	4e-32	BH087_ARATH; Transcription factor bHLH87
TrEMBL	A0A287KZ72	4e-54	A0A287KZ72_HORVV; Uncharacterized protein
STRING	Sb03g025570.1	7e-54	(Sorghum bicolor)
STRING	Traes_3B_E1F2693CD.1	1e-56	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1546	37	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	9e-25	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]