PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462895884
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C3H
Protein Properties Length: 733aa    MW: 81344 Da    PI: 6.3547
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462895884genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.24.3e-06951071426
                --TTTTT-SS-SS CS
    zf-CCCH  14 tCkyGdrCkFaHg 26 
                 CkyG++C+F+H+
  462895884  95 SCKYGASCRFSHD 107
                7***********6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501039.70478109IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.7122147IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.20.20.703.8E-67324551IPR013785Aldolase-type TIM barrel
CDDcd028015.79E-87328553No hitNo description
SuperFamilySSF513951.05E-53328551No hitNo description
PfamPF012074.7E-49331549IPR001269tRNA-dihydrouridine synthase
PROSITE patternPS011360412430IPR018517tRNA-dihydrouridine synthase, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008033Biological ProcesstRNA processing
GO:0055114Biological Processoxidation-reduction process
GO:0017150Molecular FunctiontRNA dihydrouridine synthase activity
GO:0046872Molecular Functionmetal ion binding
GO:0050660Molecular Functionflavin adenine dinucleotide binding
Sequence ? help Back to Top
Protein Sequence    Length: 733 aa     Download sequence    Send to blast
MAATAPATDP PDFSPAVAAA SQPTPEELVA RAVAPVKPAF LRPPPVREAP KEDGKAAGIT  60
AEKKSKRQLK RERQQEKKST SHLCIQVGKS GNVDSCKYGA SCRFSHDINA YLAQKPADLE  120
GTCPFASSGM LCPYGLTCRY LSMHNNQSPE NCPEGNREIN SFNKDTQKLL WKNKYDFPKA  180
TAQIKLLGLK DIKKNKVNSA NDDKKADIDS PDKSCELNGN DKSESPCNTS VDVEPESNLC  240
KETDNSEGEL LAANSIQLVE PRPLKKSKVE VDETENHEAG IHDNEAEPED QKLSNGLEVP  300
SNNQSSCRID LITTPHLHEK KIIDFREKLY LAPLTTVGNL PFRRLCKTLG ADITCGEMAM  360
CSNLLQGQAS EWALLRRHSS EDLFGVQICG PYPDTIARTV ELIDNECSVD FIDINMGCPI  420
DIVVNKGAGS SLLTKPMRIK SIVQAASTVT EKPLTVKVRT AFFEGRNRAD SIVSDIYDWG  480
ASALTIHGRS RQQRYSKLAD WDYIYQCAQK APDPLHVIGN GDVFSFTDWN KHLSDCPKIS  540
TCMIARGALI KWLHCLSQSS SEQLFYGPFG SGTNGQQCDT SSILVQTINM GTKVSGGDTV  600
FEVQPWIFTE IKEQKHWDIT SGERLNILKD FVRFGLEHWG SDSKGVETTR YFLLEWLSYT  660
CRYIPVGLLD VIPQRLNWRP PSYCGRDDLE TMMASDSAAD WIRISEMLLG KVPEGFKFAP  720
KHKSNAYDRA ENG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ei9_A4e-2532552327222tRNA-dihydrouridine synthase B
6ei9_B4e-2532552327222tRNA-dihydrouridine synthase B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtCatalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462895884
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0678840.0BT067884.1 Zea mays full-length cDNA clone ZM_BFc0185C01 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824564.10.0tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like isoform X1
SwissprotQ7XT070.0DUS3L_ORYSJ; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
TrEMBLA0A3L6QB050.0A0A3L6QB05_PANMI; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]
STRINGSi009538m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103222527
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]