PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462895911

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

Protein Properties

Length: 206aa MW: 22388.3 Da PI: 7.412

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462895911	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	35.2	2.1e-11	92	168	18	97
--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 18 lpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 +p kf++eh ++++s++ t+ ++ g+ W v+l + + +++ ++G +F ka++L eg +++F+++g++ f +v vf 462895911 92 MPDKFVQEHlTDSSPSSQKATIFSRVGKFWHVEL--DPDRPGVLQGDGRARFLKAHDLSEGNVLLFRYEGNMLF--RVEVF 168 69******555568899***********..*******************************99988..66665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01019	0.0065	80	171	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	1.3E-11	91	170	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	9.15	92	171	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	5.3E-11	92	168	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	9.59E-9	92	168	No hit	No description
Pfam	PF02362	8.0E-9	92	167	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence Send to blast
MAAFSVRRRP RYAVVRLSPS CLDELVNASN TSLQTTRLYN ACTRCVRDPR ARAHLTICAA 60 RSGGVRGAAR LGGEEGGGTA QVLLVSPLGK EMPDKFVQEH LTDSSPSSQK ATIFSRVGKF 120 WHVELDPDRP GVLQGDGRAR FLKAHDLSEG NVLLFRYEGN MLFRVEVFLQ SGLLEECEAA 180 AAIRTDDIAG PSEPQEGESG PLFQSA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462895911

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022681867.1	2e-40	LOW QUALITY PROTEIN: putative B3 domain-containing protein Os06g0632500
Swissprot	Q67VL7	4e-32	Y6325_ORYSJ; Putative B3 domain-containing protein Os06g0632500
STRING	Si008427m	5e-40	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP425	35	187