PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462896072
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ARF
Protein Properties Length: 419aa    MW: 45199.2 Da    PI: 4.9945
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462896072genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.71.1e-18681203486
                SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
         B3  34 ktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                +tl+++d++g  W++++iyr++++r++lt+GW++Fv+a+ L +gD+vvF++  
  462896072  68 QTLVMRDPTGHPWQFRHIYRGTPRRHLLTTGWSKFVNAKLLVAGDTVVFMRRA 120
                48************************************************543 PP
2Auxin_resp55.13.4e-19156225168
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkma.fetedsserrl.sGtvvgvsd 68 
                 aa+ a ++s+F+v+Y+Pr ++ eFvv++++ve+al +++ +Gm ++m+ +e ed++++ +  Gtv ++++
   462896072 156 AARLAGEGSPFTVTYYPRLGAGEFVVPRKEVEDALACSWEPGMLVRMQvMEAEDARRTDWaNGTVKALHA 225
                 67788899***************************************858***************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.001820127IPR003340B3 DNA binding domain
SuperFamilySSF1019361.22E-1653129IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.2E-2158124IPR015300DNA-binding pseudobarrel domain
PfamPF023627.4E-1662120IPR003340B3 DNA binding domain
CDDcd100171.80E-1468116No hitNo description
PROSITE profilePS5086310.60269132IPR003340B3 DNA binding domain
PfamPF065079.3E-15156225IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MAEAPSIVDG DVWLACAVPL SRLPGVGSQV YYFPHGHAEQ CPAPLPGPLP TPHLFPCTLD  60
FEADPPVQTL VMRDPTGHPW QFRHIYRGTP RRHLLTTGWS KFVNAKLLVA GDTVVFMRRA  120
DGARRAPRYP PQMQAQAQAQ RRNARARVPP EDVVEAARLA GEGSPFTVTY YPRLGAGEFV  180
VPRKEVEDAL ACSWEPGMLV RMQVMEAEDA RRTDWANGTV KALHADIWRA LEIDWDDTAS  240
SSSAKSRFVN VWQVQFVGYP PLLKRLRISD TIAPLCFGDD SMAAPLIGPG GQEMAVLLGA  300
PIPAAAGMQG ARHTGPTDVP SSSSAMLTTQ LLFPSPIEDL QVPPSLSGGS EILDPEFGSP  360
PSNSVNMNPP NLPVGNKSIQ LFGTTITPHA VQTATDGGSQ EVNNEVPDGV VDENAEQDG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A3e-2554237183372Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMap462896072
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3735912e-51AK373591.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3035M12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825005.10.0auxin response factor 13-like
SwissprotQ7XSS91e-101ARFM_ORYSJ; Auxin response factor 13
TrEMBLA0A2T7D2931e-180A0A2T7D293_9POAL; Auxin response factor
STRINGSi021833m1e-174(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113553137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.14e-41auxin response factor 17
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]