PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462896237
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family NAC
Protein Properties Length: 200aa    MW: 22295.3 Da    PI: 6.7779
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462896237genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM40.49e-13286891128
        NAM  91 evlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                ++ls    + +  g+kk Lvfy+gr+pkg+kt+W+mheyrl
  462896237  28 PILSGaggEAKCLGVKKALVFYQGRSPKGTKTEWLMHEYRL 68 
                4555444345569**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100519.813192IPR003441NAC domain
SuperFamilySSF1019413.4E-172892IPR003441NAC domain
PfamPF023651.2E-53568IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MVNELYYCRE GDVRRRRVVL LQPTGAQPIL SGAGGEAKCL GVKKALVFYQ GRSPKGTKTE  60
WLMHEYRLLL DTRPNHNSMR LDDWVLCRVR NKQACVSSSQ LAPAENSSSS DPTISHDDEA  120
DMAPPSNVDD GHLLRYLIEG GGPDLQEPNI AASSSSTDHH RLQVSSVLES IKRKLSFQAI  180
DELYLLQPPP STYLCLLYIT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-19229499167NO APICAL MERISTEM PROTEIN
1ut4_B5e-19229499167NO APICAL MERISTEM PROTEIN
1ut7_A5e-19229499167NO APICAL MERISTEM PROTEIN
1ut7_B5e-19229499167NO APICAL MERISTEM PROTEIN
3swm_A5e-192494104170NAC domain-containing protein 19
3swm_B5e-192494104170NAC domain-containing protein 19
3swm_C5e-192494104170NAC domain-containing protein 19
3swm_D5e-192494104170NAC domain-containing protein 19
3swp_A5e-192494104170NAC domain-containing protein 19
3swp_B5e-192494104170NAC domain-containing protein 19
3swp_C5e-192494104170NAC domain-containing protein 19
3swp_D5e-192494104170NAC domain-containing protein 19
4dul_A5e-19229499167NAC domain-containing protein 19
4dul_B5e-19229499167NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462896237
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004971462.18e-42NAC transcription factor 32
TrEMBLA0A3L6QZ617e-43A0A3L6QZ61_PANMI; NAC domain-containing protein 72-like
STRINGSi004195m3e-41(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08790.18e-22NAC family protein