PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462896246
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C2H2
Protein Properties Length: 238aa    MW: 27294.3 Da    PI: 10.5006
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462896246genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2201.8e-062749123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               ++C++Cgk F r  nL+ H r H
  462896246 27 FVCEICGKGFQRDQNLQLHRRGH 49
               89*******************88 PP
2zf-C2H213.80.00017107129123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                +kC +C+k++  +s+ k H +t+
  462896246 107 WKCDKCSKRYAVQSDWKAHGKTC 129
                58*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.3E-82649No hitNo description
SMARTSM003550.0122749IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.6142749IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.5E-62749IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002802949IPR007087Zinc finger, C2H2
SMARTSM0035525072102IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.9E-495128IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.3E-8102127No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MYMCILIDPD AEVIALSPRT LLATNRFVCE ICGKGFQRDQ NLQLHRRGHN LPWKLKQSNG  60
GGKNGIRRKR VYVCPETSCV HHNPSRALGD LTGIKKHFCR KHGEKKWKCD KCSKRYAVQS  120
DWKAHGKTCG TREYRCDCGT LFSRRDSFIT HRAFCDALAQ ETARIHHHRQ IQNNLSLWGP  180
GVQELRHQRV PMRLRHPLLQ EGQLHHPPSL LRRPRAGDGA HPPPPSDSEQ SLAVGSRW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-35103165365Zinc finger protein JACKDAW
5b3h_F2e-35103165365Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462896246
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022682927.11e-102zinc finger protein MAGPIE
SwissprotQ9SCQ64e-99IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLA0A368QZL11e-100A0A368QZL1_SETIT; Uncharacterized protein
STRINGSi005031m1e-101(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.12e-99indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]