PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462896821
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family NAC
Protein Properties Length: 352aa    MW: 38302.7 Da    PI: 8.1722
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462896821genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.22.2e-51151491129
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..... 95 
                lppGfrF Ptdee+++ yL +k  + +++  +++ ev+++++ePwdLp+k+k +ekewyfF+++  ky+tg+r+nratk+gyWkatg+d+e++++     
  462896821  15 LPPGFRFYPTDEEVITSYLLQKFLNPSFSP-RAMGEVNLNTCEPWDLPSKAKMGEKEWYFFCHKGMKYPTGSRTNRATKEGYWKATGRDREIFKTasasa 113
                79*************************999.88***************99999*****************************************988888 PP

        NAM  96 ..kgelvglkktLvfykgrapkgektdWvmheyrle 129
                  ++elvg+kktLvfy grap+g+kt+Wvmheyrle
  462896821 114 ggGRELVGMKKTLVFYMGRAPRGSKTNWVMHEYRLE 149
                777777****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.36E-5512156IPR003441NAC domain
PROSITE profilePS5100550.76215165IPR003441NAC domain
PfamPF023659.7E-2716148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MVERGVKSEQ GDLFLPPGFR FYPTDEEVIT SYLLQKFLNP SFSPRAMGEV NLNTCEPWDL  60
PSKAKMGEKE WYFFCHKGMK YPTGSRTNRA TKEGYWKATG RDREIFKTAS ASAGGGRELV  120
GMKKTLVFYM GRAPRGSKTN WVMHEYRLEG KSKDNNHSNL RFNPKKGEEK KAAVEYSAGT  180
PNVSSISVDA AGDGGDDFLD SMIDPMSYLN STMDASVAPY NAVATTTSSA VGSFVNLPKY  240
TFTDMTSRNL HEAAVANSTV QTSSSGYSSS WNLHQANHAM GSYNLHDQAM MARALGGVIS  300
PNLVGGLPSF STSFTGISQQ NSLGVPQQKL EPDYGGSYAT NYLTGGAATD ST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-471316015154NO APICAL MERISTEM PROTEIN
1ut4_B1e-471316015154NO APICAL MERISTEM PROTEIN
1ut7_A1e-471316015154NO APICAL MERISTEM PROTEIN
1ut7_B1e-471316015154NO APICAL MERISTEM PROTEIN
3swm_A1e-471316018157NAC domain-containing protein 19
3swm_B1e-471316018157NAC domain-containing protein 19
3swm_C1e-471316018157NAC domain-containing protein 19
3swm_D1e-471316018157NAC domain-containing protein 19
3swp_A1e-471316018157NAC domain-containing protein 19
3swp_B1e-471316018157NAC domain-containing protein 19
3swp_C1e-471316018157NAC domain-containing protein 19
3swp_D1e-471316018157NAC domain-containing protein 19
4dul_A1e-471316015154NAC domain-containing protein 19
4dul_B1e-471316015154NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response (By similarity). Binds to DNA-specific sequences of CLPD1 and OAT promoters in vitro (PubMed:18813954). {ECO:0000250|UniProtKB:Q7F2L3, ECO:0000269|PubMed:18813954}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462896821
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt and cold stresses. {ECO:0000269|PubMed:18813954}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004977422.11e-159NAC domain-containing protein 77
SwissprotQ5CD171e-101NAC77_ORYSJ; NAC domain-containing protein 77
TrEMBLK3Y8761e-157K3Y876_SETIT; Uncharacterized protein
STRINGSi010417m1e-158(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51203063
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.27e-70Arabidopsis NAC domain containing protein 87