PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462896976
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C2H2
Protein Properties Length: 240aa    MW: 27836.1 Da    PI: 8.9977
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462896976genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.00059225323
               ET..TTTEEESSHHHHHHHHHH.T CS
    zf-C2H2  3 Cp..dCgksFsrksnLkrHirt.H 23
               Cp   C++ Fs k n +rH +  H
  462896976  2 CPieGCNRKFSIKGNVQRHVQEiH 25
               9999***************99877 PP
2zf-C2H219.33.1e-063660123
               EEET..TTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
               y Cp  +C k+F+  s Lk+H  +H
  462896976 36 YICPevNCEKTFKYASKLKKHEESH 60
               89*******************9988 PP
3zf-C2H217.11.5e-05127151223
                EET..TTTEEESSHHHHHHHHHH.T CS
    zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                kC+  dC+ sFs ksnL++H +  H
  462896976 127 KCHfkDCKCSFSKKSNLVKHVKAvH 151
                7*******************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003554.1125IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.642125IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.0E-4226IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.35E-5226No hitNo description
PROSITE patternPS000280225IPR007087Zinc finger, C2H2
SuperFamilySSF576676.12E-53260No hitNo description
Gene3DG3DSA:3.30.160.602.8E-63260IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00593660IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.5753660IPR007087Zinc finger, C2H2
PROSITE patternPS0002803860IPR007087Zinc finger, C2H2
SMARTSM003556.16893IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807093IPR007087Zinc finger, C2H2
SMARTSM003552096117IPR015880Zinc finger, C2H2-like
SuperFamilySSF576674.52E-6107168No hitNo description
SMARTSM003550.053126151IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.967126156IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.3E-5127150IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280128151IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.9E-5151180IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003554.1157183IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.829157183IPR007087Zinc finger, C2H2
PROSITE patternPS000280159183IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0003676Molecular Functionnucleic acid binding
GO:0003676Molecular Functionnucleic acid binding
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
GO:0046872Molecular Functionmetal ion binding
GO:0046872Molecular Functionmetal ion binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MCPIEGCNRK FSIKGNVQRH VQEIHKDGSC ENKKEYICPE VNCEKTFKYA SKLKKHEESH  60
VKLDYTEVIC CEPGCMKTFT NVECLMAHKQ SCHQHVQCDV CGTKQLKKNF KRHCRMHEGS  120
CVTERIKCHF KDCKCSFSKK SNLVKHVKAV HEQHRPFVCR FSGCGKKFSY KHVRDNHEKS  180
RAHVYIEGDF EAVEQQRHSA GGRKRKHITV ESLMRKRVAA PDDAPAPEDG IEYLRWLLSG
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462896976
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004960333.11e-144transcription factor IIIA
SwissprotQ84MZ42e-68TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A3L6RD091e-142A0A3L6RD09_PANMI; Uncharacterized protein
TrEMBLK3Z7441e-143K3Z744_SETIT; Uncharacterized protein
STRINGSi022364m1e-143(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23823882
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.12e-63transcription factor IIIA