PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462896978
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C2H2
Protein Properties Length: 161aa    MW: 17928.5 Da    PI: 6.869
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462896978genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.72.6e-07118140123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                + C++Cg++F+ + +Lk+H+++H
  462896978 118 HDCEKCGMRFKKPAHLKQHMQSH 140
                56*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.46E-772140No hitNo description
SMARTSM00355157496IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.5E-5118143IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0047118140IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.136118143IPR007087Zinc finger, C2H2
PROSITE patternPS000280120140IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
FSLAPRLRLS RRLPRDPADS AVPPRFEVLV LGVGEMGGGE PVPREGGEPG TDDGMSTAAE  60
AAGTPAPVRD IRRYKCEFCS VVRSKKSLIR AHVLEHHEDE VDGLEDYLGG VPRKEVFHDC  120
EKCGMRFKKP AHLKQHMQSH SLEIWMCEAL DPKELQNARG F
Cis-element ? help Back to Top
SourceLink
PlantRegMap462896978
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003566649.16e-37transcription factor IIIA isoform X1
TrEMBLC0J7J88e-40C0J7J8_MAIZE; Truncated transcription factor IIIA EI isoform (Fragment)
STRINGBRADI2G37790.12e-36(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17974810
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.27e-18transcription factor IIIA