PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462897554
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family NAC
Protein Properties Length: 357aa    MW: 39737.6 Da    PI: 9.6875
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462897554genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM94.71.5e-29191742127
        NAM   2 ppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLp.kkvka.eekewyfFskrdkkyatgkrknratk..sgyWk.atgkdkev 92 
                p+GfrF+Ptdeelv +yL +k++gk+       +++i e+d+y+++P+ L  +k+k  +e++wyf s+r +ky+ g+r++r t+  +g+Wk +tg++ + 
  462897554  19 PVGFRFKPTDEELVEYYLLPKLQGKPsgkpSVSNDAIIEADVYECDPEILInQKYKDrGENRWYFLSPRTRKYPGGTRPSRRTAddRGRWKpSTGQSAPK 118
                89***********************99986444577**************74455443677*******************9665569****778887777 PP

        NAM  93 lsk.......kgel................vglkktLvfykgrapkgektdWvmheyr 127
                + k       +  +                + + +tL+++ g a++ +kt+W+mhe +
  462897554 119 KGKsereleeE--EdeedgkeeklcsngavKYCENTLAYHVGPAKDEKKTKWLMHELT 174
                76654555540..0555666677777777799************************76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.19E-3114205IPR003441NAC domain
PROSITE profilePS5100533.11818205IPR003441NAC domain
PfamPF023651.8E-1819174IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MAEGEEGSSG AGVDKKPYPV GFRFKPTDEE LVEYYLLPKL QGKPSGKPSV SNDAIIEADV  60
YECDPEILIN QKYKDRGENR WYFLSPRTRK YPGGTRPSRR TADDRGRWKP STGQSAPKKG  120
KSERELEEEE DEEDGKEEKL CSNGAVKYCE NTLAYHVGPA KDEKKTKWLM HELTVPEYEI  180
KLGTSRPSAN TMLLDRYAMC TIYKSPLTKW VKQEEEETRA ALEGAAAPSS NAAGPAPESG  240
QVTSAPPALS SKRTGKRTAV DQQPIGHATA PKRGRRPALP RGPPAPAHGR SESGQRGTTV  300
CPDTTRKCRG RRRRVTACRG PCSCHRRCTG SWGSSNQDRR LYTSRRLRPR TTLLDEQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-211920418164NO APICAL MERISTEM PROTEIN
1ut4_B5e-211920418164NO APICAL MERISTEM PROTEIN
1ut7_A5e-211920418164NO APICAL MERISTEM PROTEIN
1ut7_B5e-211920418164NO APICAL MERISTEM PROTEIN
4dul_A5e-211920418164NAC domain-containing protein 19
4dul_B5e-211920418164NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462897554
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823986.16e-83NAC domain-containing protein 22-like
TrEMBLA0A2T8IDG61e-81A0A2T8IDG6_9POAL; Uncharacterized protein
STRINGSi010053m3e-77(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143612024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10480.24e-22NAC domain containing protein 50