PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462897569

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

bHLH

Protein Properties

Length: 404aa MW: 45684.8 Da PI: 5.499

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462897569	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	41.7	2e-13	194	241	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++h + ErrRR+++N+ ++ L++l+P+ +++Ka+iL +++ Y+k+L+ 462897569 194 KNHVMSERRRREKLNEMYAVLKSLVPTT-----HRMDKASILAETITYLKELE 241 5899*********************7.....59*************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	16.139	191	240	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.01E-14	194	245	No hit	No description
SuperFamily	SSF47459	7.46E-18	194	255	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.4E-17	195	253	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.7E-11	195	241	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.6E-16	197	246	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence Send to blast
MADSKTFPRK LLAKVLEDSD LLNSATTYFN ELKFPRCTEN SLANQTRETN YNIIVHDDLD 60 QNATETITAD GNELDEVDCL FNANHDQITA VVDDFYGLWE ELLDIQTLHD TNLIMDGSSL 120 VAAPEAKDAA TSSIPEDSSC VTHFINWTRS DSYERVVPVI EEPQKLLKKV VAAGAWMNNT 180 VESTARTTHE RGIKNHVMSE RRRREKLNEM YAVLKSLVPT THRMDKASIL AETITYLKEL 240 EQKVKELESR RESISIPDDK RPTCHENEIT AKRIPARTKR KKASKLGNGM EMEHHWVFSK 300 DGPSKVNVTV IGTEVLLEVQ CQWKELLMTH VFDTIKSLDL DVLSVEASTP NHVMGLKIRA 360 QFASPNPFQP GIISEALRRA ITNNSRDIKI PKGIPSDEKE AEML

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence Send to blast

MADSKTFPRK LLAKVLEDSD LLNSATTYFN ELKFPRCTEN SLANQTRETN YNIIVHDDLD  60
QNATETITAD GNELDEVDCL FNANHDQITA VVDDFYGLWE ELLDIQTLHD TNLIMDGSSL  120
VAAPEAKDAA TSSIPEDSSC VTHFINWTRS DSYERVVPVI EEPQKLLKKV VAAGAWMNNT  180
VESTARTTHE RGIKNHVMSE RRRREKLNEM YAVLKSLVPT THRMDKASIL AETITYLKEL  240
EQKVKELESR RESISIPDDK RPTCHENEIT AKRIPARTKR KKASKLGNGM EMEHHWVFSK  300
DGPSKVNVTV IGTEVLLEVQ CQWKELLMTH VFDTIKSLDL DVLSVEASTP NHVMGLKIRA  360
QFASPNPFQP GIISEALRRA ITNNSRDIKI PKGIPSDEKE AEML

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	199	204	ERRRRE
2	200	205	RRRREK

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462897569

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025823475.1	1e-123	anthocyanin regulatory R-S protein-like isoform X2
Swissprot	P13027	2e-80	ARRS_MAIZE; Anthocyanin regulatory R-S protein
TrEMBL	A0A2T7CYI5	1e-126	A0A2T7CYI5_9POAL; Uncharacterized protein
STRING	Si000845m	1e-117	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP932	33	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G63650.3	2e-27	bHLH family protein

Publications ? help Back to Top
Pattanaik S,Xie CH,Yuan L The interaction domains of the plant Myc-like bHLH transcription factors can regulate the transactivation strength. Planta, 2008. 227(3): p. 707-15 [PMID:18075757] Huang ZA, et al. The upregulation of NtAN2 expression at low temperature is required for anthocyanin accumulation in juvenile leaves of Lc-transgenic tobacco (Nicotiana tabacum L.). J Genet Genomics, 2012. 39(3): p. 149-56 [PMID:22464474] Perrot GH,Cone KC Nucleotide sequence of the maize R-S gene. Nucleic Acids Res., 1989. 17(19): p. 8003 [PMID:2798145] Li P, et al. Combined bulked segregant sequencing and traditional linkage analysis for identification of candidate gene for purple leaf sheath in maize. PLoS ONE, 2018. 13(1): p. e0190670 [PMID:29304111]