PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462897697
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family WRKY
Protein Properties Length: 273aa    MW: 29658 Da    PI: 10.9472
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462897697genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.55.6e-333390259
               --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
               +Dgy+WrKYGqK vk+s++prsYYrCt+++Cp kk+vers +dp vv++tYeg+H+h+
  462897697 33 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQRCPLKKRVERSYQDPAVVITTYEGKHTHP 90
               8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.3E-351792IPR003657WRKY domain
SuperFamilySSF1182902.48E-292492IPR003657WRKY domain
PROSITE profilePS5081132.2142792IPR003657WRKY domain
SMARTSM007742.6E-373291IPR003657WRKY domain
PfamPF031063.8E-263390IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MICRAGKGKG KGEKRPRQPR FAFMTKSEVD HLEDGYRWRK YGQKAVKNSP YPRSYYRCTT  60
QRCPLKKRVE RSYQDPAVVI TTYEGKHTHP IPATLRGSTH LLAAQGLHHL GGGLTPHTMG  120
AAGSAVLGLL PPLRGGASHL TMPPPTLSSH GLAAGPMSSG VATTTTTKIC TTAWNDLIAF  180
RHDGTVLVVG TKGRYGKMVR GSFCSLFRAS TAAQLGRAFG LDGIASDCDG KAAEKAELDK  240
RRSGARRLEV RGCNMANGAD RYRNRTTRRS KAY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-282393878Probable WRKY transcription factor 4
2lex_A4e-282393878Probable WRKY transcription factor 4
Cis-element ? help Back to Top
SourceLink
PlantRegMap462897697
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0681161e-133BT068116.1 Zea mays full-length cDNA clone ZM_BFb0045M20 mRNA, complete cds.
GenBankKJ7275431e-133KJ727543.1 Zea mays clone pUT5403 WRKY transcription factor (WRKY95) mRNA, partial cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62337173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.11e-49WRKY DNA-binding protein 71