PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462898199
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C3H
Protein Properties Length: 76aa    MW: 8404.73 Da    PI: 5.6998
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462898199genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.63.6e-122853227
               -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                +++C f++r+G Ck+G +CkF H++
  462898199 28 EEPRCTFYSRYGMCKFGLKCKFDHPM 53
               5799********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.7132654IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-42653IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-62754IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-82853IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.6E-43251IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 76 aa     Download sequence    Send to blast
MQVPSSQGSN SSCSNCVLSS IELPLLPEEP RCTFYSRYGM CKFGLKCKFD HPMQAVMSIL  60
ASSPTSELNQ QEIPIM
Cis-element ? help Back to Top
SourceLink
PlantRegMap462898199
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015617448.27e-19zinc finger CCCH domain-containing protein 63 isoform X2
RefseqXP_015617449.18e-19zinc finger CCCH domain-containing protein 63 isoform X1
SwissprotQ2R4J47e-20C3H63_ORYSJ; Zinc finger CCCH domain-containing protein 63
TrEMBLA0A0A9E2W92e-19A0A0A9E2W9_ARUDO; Uncharacterized protein
TrEMBLA0A0A9ESB34e-19A0A0A9ESB3_ARUDO; Uncharacterized protein
STRINGOGLUM03G16500.17e-19(Oryza glumipatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16540.37e-11zinc finger nuclease 3
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]