PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462898238
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 541aa    MW: 58604.6 Da    PI: 4.9926
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462898238genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.80.000223013233254
                ..TTS-STCHHHHHHHHHHHHHH CS
        HLH  32 kapskKlsKaeiLekAveYIksL 54 
                k +++ ++Ka+iLe A+ +I +L
  462898238 301 KSDNGEMDKASILEDAIAHIADL 323
                569999**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.3E-4954243IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474595.96E-5299340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000830.00284299327No hitNo description
Gene3DG3DSA:4.10.280.105.3E-5303336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:1.20.1080.101.5E-37403529IPR023271Aquaporin-like
PfamPF002308.2E-28423533IPR000425Major intrinsic protein
SuperFamilySSF813386.41E-35426535IPR023271Aquaporin-like
PRINTSPR007834.0E-20428447IPR000425Major intrinsic protein
PRINTSPR007834.0E-20467491IPR000425Major intrinsic protein
PROSITE patternPS002210485493IPR022357Major intrinsic protein, conserved site
PRINTSPR007834.0E-20504523IPR000425Major intrinsic protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006810Biological Processtransport
GO:0016020Cellular Componentmembrane
GO:0005215Molecular Functiontransporter activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MKTEIEEIAT GGSWTEEEKS LCSSVLGSDA FTYLSKGGHA ISEGLVTTST LVDLQNKLQN  60
LVEADSQSFR WNYAIFWQLF HTKSGDIVLG WGDGCCREPH DSEMGSAAPI IIDDVPPVTK  120
QRMRKRVLQR LHATFGGADE EDFAPGIDQV TDTEIFFLTS MYFTFPRQVG GPGKVYASGA  180
PLWIPNTDRK ISPANYCYRG FLANAAGFKT IVLLPFETGV LELGSMKKVP ESVEALETIR  240
SVFSGALSNR AAIIKHDENG SVQASQGLAK IFGNNLNFSQ PSASKGVAAP NVEGSSWDPQ  300
KSDNGEMDKA SILEDAIAHI ADLKKKLTEL EAEKEKFVGR GMVDTMEQTS RPEVDIQVVQ  360
GEILVRVVSQ MEYHPIKKAE MAGAELANGL HDSAGALEEG RGDQARCESS EQDGLSSNRP  420
MFSVQFMQKI LAEIFGTYFL IFAGCAAVAV NLRTGGTVTF PGICIVWGLA VMVMVYSVGH  480
ISGAHLNPAV SIAFATCGRF PWKQVPAYAA AQMLGSTAAS LTLRLLFDNS RAHFFGEILE  540
A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A2e-21542449193Transcription factor MYC3
4rqw_B2e-21542449193Transcription factor MYC3
4rs9_A2e-21542449193Transcription factor MYC3
4yz6_A2e-21542449193Transcription factor MYC3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462898238
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004960675.11e-152transcription factor bHLH13
TrEMBLA0A0A8Y7171e-155A0A0A8Y717_ARUDO; Uncharacterized protein
TrEMBLA0A1E5VMG51e-155A0A1E5VMG5_9POAL; Transcription factor bHLH13
STRINGSi021549m1e-152(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51743860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.33e-71bHLH family protein