PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462898337
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ERF
Protein Properties Length: 270aa    MW: 31399.6 Da    PI: 8.9669
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462898337genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.12.5e-19175224255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 y+G+r+++ +g+W+AeIrdp++     r++lg++ t+e+Aaka++a ++k++g
  462898337 175 PYRGIRRRP-WGKWAAEIRDPRK---GVRVWLGTYETPEDAAKAYDAEARKIRG 224
                59*******.**********954...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.0E-36175238IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-22175234IPR016177DNA-binding domain
PROSITE profilePS5103223.894175232IPR001471AP2/ERF domain
PRINTSPR003671.1E-10176187IPR001471AP2/ERF domain
CDDcd000181.91E-29176233No hitNo description
Gene3DG3DSA:3.30.730.102.0E-31176234IPR001471AP2/ERF domain
PfamPF008471.1E-11176224IPR001471AP2/ERF domain
PRINTSPR003671.1E-10198214IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MLSATKMKKI KNHGEWGRRR LAKPYKDRDD FEAEFQAFLK ACEEMDESHD EFMALSPWED  60
DLKGVLEASK EKCTLTSAKN ENRGEWGQRR LRKPYKDGGN FEAQFQAFSM YDKIDENHDK  120
FMALRRWEDD LRGVLEGSKE KDTFTSAEND AINNHKAIDG DEVTIVMPKR KRMNPYRGIR  180
RRPWGKWAAE IRDPRKGVRV WLGTYETPED AAKAYDAEAR KIRGKKAKVN FPDETPPLVL  240
LNNTPKQIAM ARPMMLLPTE ELNINQSTDI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-20176232360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A5e-20176232663ATERF1
3gcc_A5e-20176232663ATERF1
5wx9_A1e-191762341574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462898337
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001353801.11e-55uncharacterized protein LOC100384698
TrEMBLA0A060D0T12e-54A0A060D0T1_MAIZE; AP2-EREBP transcription factor (Fragment)
TrEMBLA0A1D6KNH42e-54A0A1D6KNH4_MAIZE; Ethylene-responsive transcription factor RAP2-2
STRINGGRMZM2G050851_P014e-55(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP168501012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.11e-31ethylene-responsive element binding protein