PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462898433
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C2H2
Protein Properties Length: 123aa    MW: 13063.7 Da    PI: 12.0356
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462898433genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.0016729123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               ++C+ C k F++   L  H  +H
  462898433  7 FECKTCRKQFPSFQALGGHRTSH 29
               89**********99998888777 PP
2zf-C2H212.80.000355779123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               ++C  Cg  Fs    L  H+r+H
  462898433 57 HECAVCGLEFSMGQALGGHMRRH 79
               78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.86E-8679No hitNo description
PfamPF139122.8E-11629IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.138734IPR007087Zinc finger, C2H2
SMARTSM003550.4729IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280929IPR007087Zinc finger, C2H2
PfamPF139121.8E-115681IPR007087Zinc finger, C2H2
PROSITE profilePS501579.8475784IPR007087Zinc finger, C2H2
SMARTSM003550.895779IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805979IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
MAAEGVFECK TCRKQFPSFQ ALGGHRTSHT RLQARMLSDT APASGGAGGE RDRARVHECA  60
VCGLEFSMGQ ALGGHMRRHR GGGAADRDRR RRRRAAAAAG AGHAGPQLPP DGGRSRSTLG  120
RWS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18893RRRRRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in oxidative stress response. {ECO:0000269|PubMed:14722088}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462898433
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By H(2)O(2), heat stress, wounding and cucumber mosaic virus (CMV). {ECO:0000269|PubMed:14722088, ECO:0000269|PubMed:18922600}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703064e-77HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817787.19e-43zinc finger protein ZAT12-like
SwissprotQ424538e-22ZAT7_ARATH; Zinc finger protein ZAT7
TrEMBLA0A2S3HQN82e-41A0A2S3HQN8_9POAL; Uncharacterized protein
TrEMBLA0A2T7DEP52e-41A0A2T7DEP5_9POAL; Uncharacterized protein
STRINGSb03g039270.17e-39(Sorghum bicolor)
STRINGLPERR01G31500.15e-39(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50137157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.17e-21C2H2 family protein