PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462898925

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

HD-ZIP

Protein Properties

Length: 202aa MW: 23057 Da PI: 6.7763

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462898925	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	27.2	6.7e-09	120	138	38	56
TS-HHHHHHHHHHHHHHHH CS Homeobox 38 gLterqVkvWFqNrRakek 56 +++ rqV vWFqNrRa++k 462898925 120 SVQPRQVAVWFQNRRARWK 138 5789**************9 PP
2	HD-ZIP_I/II	77.4	2.5e-25	82	175	1	92
HD-ZIP_I/II 1 ekkrrlskeqv.klLEesFeeeekLeper.KvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekkrrl+ eq + L + + L + r+ +qprqvavWFqnrRAR+ktkqlE+d+++Lk+++dal++++++L +++++Lr++++ 462898925 82 EKKRRLTPEQRsRELVNDEHDACMLARCTcRCICWRRASVQPRQVAVWFQNRRARWKTKQLERDFDRLKASFDALRADHDALLQDNHHLRSQVR 175 699999999951344443333336655441445568999***************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	10.981	54	140	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	4.8E-8	70	143	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.33E-7	118	149	IPR009057	Homeodomain-like
Pfam	PF00046	3.1E-6	120	138	IPR001356	Homeobox domain
CDD	cd00086	1.84E-5	121	141	No hit	No description
Pfam	PF02183	1.2E-14	140	174	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MDSGRLIFNT TGSGAGQMLF LDCGMGGPGG SGMFHRVAFV GSDDEGGRPV LGLDEGRGVK 60 RPFFTSPDEL LEEEYYDEQL PEKKRRLTPE QRSRELVNDE HDACMLARCT CRCICWRRAS 120 VQPRQVAVWF QNRRARWKTK QLERDFDRLK ASFDALRADH DALLQDNHHL RSQVRIIASY 180 SFVHGRAPGV FYVDVADDEF TI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	132	140	RRARWKTKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462898925

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP092519	5e-56	FP092519.1 Phyllostachys edulis cDNA clone: bphylf056o22, full insert sequence.
GenBank	FP094790	5e-56	FP094790.1 Phyllostachys edulis cDNA clone: bphylf043j04, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003572981.1	2e-70	homeobox-leucine zipper protein HOX16
Swissprot	Q6YWR4	9e-59	HOX16_ORYSJ; Homeobox-leucine zipper protein HOX16
TrEMBL	A0A287UN66	1e-73	A0A287UN66_HORVV; Uncharacterized protein
STRING	MLOC_5668.1	2e-70	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2609	38	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	4e-32	homeobox 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]