PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462899233
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ERF
Protein Properties Length: 151aa    MW: 16903.6 Da    PI: 11.281
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462899233genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP227.67.3e-0990122132
        AP2   1 sgykGVrwdkkrgrWvAeIrdpseng.kr.krfs 32 
                + y+GVr+++ +g+Wv+eIr+p++n+ +r +r s
  462899233  90 PSYRGVRRRS-WGKWVSEIREPRKNCrRRrRRPS 122
                57*****887.***********999974436655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.4E-490122IPR001471AP2/ERF domain
SuperFamilySSF541712.75E-591116IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.6E-891115IPR001471AP2/ERF domain
PROSITE profilePS5103210.67991119IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MEADASHAPT TSSSFSSSPL ANGAAQELSK NSKPATTTKR KRASSPDSEE IETNTANGHG  60
EESSSCCTTE DNNNNKEAQA ATRRSGFKHP SYRGVRRRSW GKWVSEIREP RKNCRRRRRR  120
PSCRKRPAAR RPCTPAARET RCSTCRTFSW T
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
195117RRRSWGKWVSEIREPRKNCRRRR
2110119RKNCRRRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMap462899233
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT2601188e-36KT260118.1 Phyllostachys edulis DREB1A mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004976433.12e-29ethylene-responsive transcription factor TINY
TrEMBLA0A1E5VNF51e-31A0A1E5VNF5_9POAL; Ethylene-responsive transcription factor ERF038
STRINGSi010703m8e-29(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25810.12e-08ERF family protein