PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462899275
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ERF
Protein Properties Length: 161aa    MW: 17942.4 Da    PI: 4.378
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462899275genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.23.1e-161968255
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               +y+GVr +k +g+Wv+eIr+p   gk++r++lg+f ++e+Aa a++ a + l+g
  462899275 19 QYRGVRKRK-WGKWVSEIREP---GKKTRIWLGSFESPEMAAVAHDVAELWLRG 68
               69****999.**********8...557*******************99876665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.9E-301977IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-221978IPR016177DNA-binding domain
SMARTSM003804.2E-351982IPR001471AP2/ERF domain
PROSITE profilePS5103222.6551976IPR001471AP2/ERF domain
CDDcd000181.06E-271977No hitNo description
PfamPF008474.6E-102067IPR001471AP2/ERF domain
PRINTSPR003671.4E-92031IPR001471AP2/ERF domain
PRINTSPR003671.4E-94258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MEMMLDNVAG EAAGEVAGQY RGVRKRKWGK WVSEIREPGK KTRIWLGSFE SPEMAAVAHD  60
VAELWLRGRD ARLNFPVEAA AQVRFMPNLV MQQPGCGGGR EGPDVAWDVL LGADELAAES  120
RNMWAELAEA MLMAPPVWEG SLADNDEWAQ GSLWELPVWN Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-151978565ATERF1
3gcc_A2e-151978565ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462899275
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1196712e-51AC119671.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBb0084F23, complete sequence.
GenBankAC1354602e-51AC135460.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBb0091I11, complete sequence.
GenBankAP0149672e-51AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
GenBankCP0126192e-51CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828349.12e-71ethylene-responsive transcription factor ERF022
TrEMBLA0A1E5VJX27e-75A0A1E5VJX2_9POAL; Uncharacterized protein
STRINGPavir.J22217.1.p3e-68(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22443389
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.12e-30ERF family protein