PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462899384
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family Dof
Protein Properties Length: 163aa    MW: 18204.4 Da    PI: 6.8362
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462899384genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof100.41.2e-314083649
     zf-Dof  6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnv 49
                +cprCds ntkfCyynnyslsqPryfCk+CrryWtkGG+lrn+
  462899384 40 PSCPRCDSPNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNL 83
               68*****************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-222183IPR003851Zinc finger, Dof-type
PROSITE profilePS5088423.7014094IPR003851Zinc finger, Dof-type
PfamPF027019.9E-274183IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104278IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MLSSHCENIM QLPYAAVRRA AVLVDHHRRY RSPNAAEVAP SCPRCDSPNT KFCYYNNYSL  60
SQPRYFCKGC RRYWTKGGSL RNLGFFSVDQ SCYDSLGLPS TDDGGGDLIL PSTWHHRPAK  120
YEPFEPLPED AMSLHDDGCI AGADDVWSHA LACQGLEAAL CRP
Cis-element ? help Back to Top
SourceLink
PlantRegMap462899384
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0872625e-65BT087262.1 Zea mays full-length cDNA clone ZM_BFb0021J09 mRNA, complete cds.
GenBankJX4284775e-65JX428477.1 Zea mays subsp. mays clone pUT3073 DOF20 C2C2-DOF type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002439872.11e-40uncharacterized protein LOC8072499
TrEMBLC5YYR43e-39C5YYR4_SORBI; Dof-type zinc finger protein 25
TrEMBLG3LI122e-40G3LI12_SORBI; Dof (Fragment)
STRINGSb09g021690.14e-40(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26593683
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52440.11e-27Dof family protein