PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462899447
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB_related
Protein Properties Length: 370aa    MW: 40959.6 Da    PI: 9.7608
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462899447genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.92e-1278128146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 
                      ++rWT+eE+  l  +v+++G g+W+tI +          R+  ++k++w++
        462899447  78 KQRWTPEEEAALRAGVARHGVGNWRTILKDPEfsstlRYRSNVDIKDKWRN 128
                      79***********************************99***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.18273134IPR017930Myb domain
SuperFamilySSF466896.89E-1675132IPR009057Homeodomain-like
SMARTSM007171.1E-877132IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-1478129IPR009057Homeodomain-like
PfamPF002491.8E-978129IPR001005SANT/Myb domain
CDDcd116602.63E-2079130No hitNo description
SMARTSM005267.3E-12192257IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467851.14E-16193272IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150422.049194262IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.105.5E-17196264IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005383.2E-10199255IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MQNYSYLAKR QKEIRRKTPT LPLDSGERRG VANLFLPQKN GSRHTPVASI RLGCSRPLIR  60
NCTFVLVLYS TEEMGVPKQR WTPEEEAALR AGVARHGVGN WRTILKDPEF SSTLRYRSNV  120
DIKDKWRNMN VIVTASGTRE KVKTAAKKTK AAPKNNDHST AISTVTSDAE DEIVDVKPIP  180
SVSSEGCTLI SKKYQSRLDN IIMEAVKNLN EPTGSHRTAI ANYIEEQYWP PSDFDHLLSA  240
KLKELTTSGK LLKVNRKYRI APSSPYSEGR RPKMLLLEDI QRESSKLGSD DSKTLTRIQV  300
DAELARMANM TAEEAAVAAA RAVAEAEAIL AEAEAAVREA EAAEADAQAA QAFAEAALLT  360
LKNRNAEKLV
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462899447
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817366.11e-137single myb histone 5-like
RefseqXP_025817367.11e-137single myb histone 5-like
RefseqXP_025817368.11e-137single myb histone 5-like
SwissprotC0HIA31e-133SMH6_MAIZE; Single myb histone 6
TrEMBLA0A3L6TP231e-137A0A3L6TP23_PANMI; Uncharacterized protein
STRINGPavir.Ia01166.1.p1e-136(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132438110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.31e-65telomere repeat binding factor 1
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]