PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462899820
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bZIP
Protein Properties Length: 377aa    MW: 39879.4 Da    PI: 5.8896
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462899820genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_152.11.4e-16202252457
                XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 
                +kr rr+ +NRe+ArrsR+RK+a ++ Le+ v++L +eN +L k+l   +   +
  462899820 202 VKRMRRMVSNRESARRSRKRKQAHLADLETQVDQLRGENASLFKQLTDAN---Q 252
                79**************************************9996555444...4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.2E-17199263IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.185201253IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.75E-13202254No hitNo description
PfamPF001705.4E-14202251IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.7E-13203254No hitNo description
CDDcd147021.90E-22204254No hitNo description
PROSITE patternPS000360206221IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
PPIAKKTFLS WVFCFAGVPR LSKSLLDDDA AHARESKRQS SSEKDREVQG ERASDQCAQM  60
KKCPSELELE AFLGGVERAA AAAAAAAEQK PGHVAPFGAG GIMFPAGGAD LSAFSFADSN  120
TLNGSIPNHI WSHNHGARHP AISTTIESQS SICAAASPTS ATNLNVKESQ TLGGTSGSDS  180
DSDSFLDIEG GPCEQSTNPL DVKRMRRMVS NRESARRSRK RKQAHLADLE TQVDQLRGEN  240
ASLFKQLTDA NQQFTTAVTD NRILKSDVEA LRVKVKLAED MVARGALSCG LGHLGLSPAL  300
NPRQACRGPD VLSGLDFPGD DACFTGLSPT EQVQNSPLQS IASLESLENR MPSEVTSCGG  360
GAGVDVWGWD SNGGLSK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1215221RRSRKRK
2215222RRSRKRKQ
3217222SRKRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that possesses broad binding specificity for DNA promoter elements with the core sequence 5'-ACGT-3'. May be involved in the regulation of genes expressed during seed development (PubMed:7919992). Binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). {ECO:0000269|PubMed:11133985, ECO:0000269|PubMed:7919992}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462899820
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021315644.10.0basic leucine zipper 9-like isoform X1
SwissprotQ6ETX01e-144RSBZ3_ORYSJ; bZIP transcription factor RISBZ3
TrEMBLA0A194YMZ40.0A0A194YMZ4_SORBI; Uncharacterized protein
STRINGSb04g005020.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20953796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.16e-43basic leucine zipper 9
Publications ? help Back to Top
  1. Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F
    A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif.
    J. Biol. Chem., 2001. 276(17): p. 14139-52
    [PMID:11133985]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Izawa T,Foster R,Nakajima M,Shimamoto K,Chua NH
    The rice bZIP transcriptional activator RITA-1 is highly expressed during seed development.
    Plant Cell, 1994. 6(9): p. 1277-87
    [PMID:7919992]