PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462899940

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

LBD

Protein Properties

Length: 318aa MW: 33723.5 Da PI: 8.5583

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462899940	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	81.7	1.1e-25	7	69	1	63
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvy 63 +CaaCk+lrrkC+++Cv+apyfp ++p+kfa vhk+FGasnv+k+l++lp+++r da+++l++ 462899940 7 PCAACKLLRRKCTQGCVFAPYFPPDSPAKFASVHKVFGASNVSKILNELPQSQRGDAVTALAF 69 7***********************************************************987 PP
2	DUF260	48.6	2.3e-15	95	151	40	96
DUF260 40 snvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 n++k+l++lp+++r da+ssl++eA+ar+rdPvyG+v+ i+ lq ++++++ ela+ 462899940 95 XNLSKILNELPQSQRGDAVSSLAFEADARLRDPVYGCVAYITVLQVRIKEARDELAA 151 699*************************************************99985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	21.195	6	156	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.5E-25	7	69	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.1E-14	95	150	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence Send to blast
MSSSSSPCAA CKLLRRKCTQ GCVFAPYFPP DSPAKFASVH KVFGASNVSK ILNELPQSQR 60 GDAVTALAFP XXXXXXXXXX XXXXXXXXXX XXXXXNLSKI LNELPQSQRG DAVSSLAFEA 120 DARLRDPVYG CVAYITVLQV RIKEARDELA AGAPPATSAR PRSRRSSPPL PPRRRSTSTT 180 STSTPPTCTS ASASGLISSS RWCSRFSSTT SSKAQQLAAA VEVAREQAGM MMRQAYAPGG 240 ATVPHDVAAQ YDGGFFLQQQ QQQSACASQA QTAVALTYQM DSSPPPSSCG QSPAEEVSQQ 300 QHTDGSDEGS GGVALPAC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-34	4	151	8	106	LOB family transfactor Ramosa2.1
5ly0_B	3e-34	4	151	8	106	LOB family transfactor Ramosa2.1

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462899940

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK368134	9e-59	AK368134.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2068L23.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6143	34	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	4e-39	ASYMMETRIC LEAVES 2-like 1