PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462899991
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family WRKY
Protein Properties Length: 242aa    MW: 25736.7 Da    PI: 9.7461
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462899991genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.33.2e-3372129259
                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                +Dgy+WrKYGqK vk+s+fprsYYrCt ++C+vkk+vers+edp+vv++tYeg+H h+
  462899991  72 EDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPSVVITTYEGQHCHH 129
                8******************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.2E-3456129IPR003657WRKY domain
SuperFamilySSF1182908.89E-2963130IPR003657WRKY domain
PROSITE profilePS5081130.12566131IPR003657WRKY domain
SMARTSM007741.6E-3871130IPR003657WRKY domain
PfamPF031064.0E-2672129IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MAGAAGDRPE GVGGWSGDAG ASSSSSGDGD GDQKPAAEAV SVKPAPATKK GQKRARQPRF  60
AFMTKSEIDH LEDGYRWRKY GQKAVKNSPF PRSYYRCTNS KCTVKKRVER SSEDPSVVIT  120
TYEGQHCHHI ASFQRGAGAA HLHSAAAVAL AEQLPFVPAQ RRLYGLPSLR PQSSPSSETA  180
ITSALTALQH LNGSEELGRT SYNERVSMAL SPSTPSSSSV PPAISVEKGL LDDIVPHGVR  240
HG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-2661130776Probable WRKY transcription factor 4
2lex_A1e-2661130776Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462899991
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025798563.15e-92probable WRKY transcription factor 57
TrEMBLA0A1E5W3W41e-102A0A1E5W3W4_9POAL; Putative WRKY transcription factor 57
STRINGPavir.J37837.1.p3e-97(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21253796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.24e-53WRKY DNA-binding protein 57