PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462900444
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family M-type_MADS
Protein Properties Length: 179aa    MW: 19901 Da    PI: 9.4769
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462900444genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF688.9e-222165347
               --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
     SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
               i +k +rqvtf+kR+ gi+KKA+EL  LCda+vaviifs+ gk y
  462900444 21 IPDKEKRQVTFTKRKGGIFKKASELILLCDADVAVIIFSEAGKPY 65
               7899**************************************966 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.6E-271170IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.8661171IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.15E-261281IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-181333IPR002100Transcription factor, MADS-box
PfamPF003191.5E-222165IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-183348IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-184869IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MTTVVNRKQS KGRQVIKIEY IPDKEKRQVT FTKRKGGIFK KASELILLCD ADVAVIIFSE  60
AGKPYALSSP SVDDILSRFT RDDAEDDAPA LIQGVADRGA VEAIERQVEE GKALVAAEML  120
RLRAAGDKVM QAAAAAGKKF WWEVDVEALG MEELPVFDSA LKRLRDNLRN HVKKMLKTQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-1612111295MEF2C
5f28_B2e-1612111295MEF2C
5f28_C2e-1612111295MEF2C
5f28_D2e-1612111295MEF2C
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462900444
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025811768.12e-54agamous-like MADS-box protein AGL62
TrEMBLA0A1E5UM654e-53A0A1E5UM65_9POAL; Uncharacterized protein
STRINGPavir.J29996.1.p4e-49(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28333088
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.13e-24AGAMOUS-like 29