PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462900609
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family GATA
Protein Properties Length: 158aa    MW: 17396.9 Da    PI: 9.9308
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462900609genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.82e-202862135
       GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
               C+ C+ttkTplWR gp+g+k+LCnaCG++yrk+++
  462900609 28 CADCHTTKTPLWRGGPEGPKSLCNACGIRYRKRRR 62
               ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577169.98E-142061No hitNo description
PROSITE profilePS5011413.2312258IPR000679Zinc finger, GATA-type
SMARTSM004012.5E-182279IPR000679Zinc finger, GATA-type
CDDcd002022.53E-152763No hitNo description
Gene3DG3DSA:3.30.50.102.6E-162762IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS0034402853IPR000679Zinc finger, GATA-type
PfamPF003203.1E-182862IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MEAEMETDPI SPSPDDTTTA SGGEAKACAD CHTTKTPLWR GGPEGPKSLC NACGIRYRKR  60
RRQALGLDAN AEPQLDQQQK KKAAAAAASS SKEDKKKEDK KEEGDKKKQV TVELRVVGFG  120
KEVMLKQRRR MRRKKCLSEE ERAAVLLMSL SSGVIYAS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15761RKRRR
2126132QRRRMRR
3127134RRRMRRKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00335DAPTransfer from AT3G06740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462900609
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0989132e-36FP098913.1 Phyllostachys edulis cDNA clone: bphyst028n16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818098.19e-64GATA transcription factor 15-like
TrEMBLA0A0A9NUC32e-79A0A0A9NUC3_ARUDO; Uncharacterized protein
STRINGPavir.Eb04066.1.p2e-61(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24183892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.17e-21GATA transcription factor 15