PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462900735

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

GRAS

Protein Properties

Length: 292aa MW: 31009.4 Da PI: 7.0886

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462900735	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	165.5	4.4e-51	62	292	132	374
GRAS 132 LasRpegppslRiTgvgspesg.....skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserde 226 La+R+ + sl++T+v +p+s + +l ++gerL+k+Ae+ gv+ +f+v v+ r ++l+ ++L +++gE+laVnl+++l +++desvs +++rde 462900735 62 LADRRVPGTSLKVTAVTDPTSPftqqpLTATLVAVGERLKKLAERAGVEYRFEV-VSCRAAELDASKLGCEHGEVLAVNLAFALSHVPDESVSPANPRDE 160 99**************9988887777788999***************9.7999************************************* PP GRAS 227 vLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkp 326 +L+ v+ l P+vv++veqe+++n++++ +rf++a+ +y a++dslea+l+r+s er++ E++ l++++ n+v eg +r er+e ++ 462900735 161 LLRRVRALGPQVVTLVEQELNTNTAPLYARFTDACAHYGAILDSLEATLGRDSAERAMAEAA-LAKKAANAVGREGPDRLERCEVFG------------- 246 *********************************************************9.9****************665............. PP GRAS 327 vplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +ls ++a+q+ + + ++ g+ ++ e+g l lgW++r ++++SaWr 462900735 247 -TLSPSIADQVVARVGPTP-PGFAMKTENGVLRLGWNGRVVTVASAWR 292 .69***********9.9************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	19.712	1	292	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.5E-48	62	292	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MMVAALSSRI APAAAASAPA TQHLAELCGA EQRNGSQLLH ERSPCFRLAL HAANVAIVEA 60 YLADRRVPGT SLKVTAVTDP TSPFTQQPLT ATLVAVGERL KKLAERAGVE YRFEVVSCRA 120 AELDASKLGC EHGEVLAVNL AFALSHVPDE SVSPANPRDE LLRRVRALGP QVVTLVEQEL 180 NTNTAPLYAR FTDACAHYGA ILDSLEATLG RDSAERAMAE AALAKKAANA VGREGPDRLE 240 RCEVFGTLSP SIADQVVARV GPTPPGFAMK TENGVLRLGW NGRVVTVASA WR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-19	37	291	100	378	Protein SCARECROW
5b3h_A	2e-19	37	291	99	377	Protein SCARECROW
5b3h_D	2e-19	37	291	99	377	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462900735

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020401436.1	1e-152	scarecrow-like protein 8
Swissprot	Q9FYR7	2e-69	SCL8_ARATH; Scarecrow-like protein 8
TrEMBL	A0A3L6Q6Y6	1e-155	A0A3L6Q6Y6_PANMI; Scarecrow-like protein 8
STRING	GRMZM2G173429_P01	1e-152	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4188	34	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52510.1	5e-61	SCARECROW-like 8