PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462901191
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family NF-YB
Protein Properties Length: 64aa    MW: 6937.74 Da    PI: 4.4817
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462901191genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB83.62.3e-261764249
      NF-YB  2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtse 49
               +eqdrflPian+srim++++P+n+ki+kdak++vqecvsefisf+tse
  462901191 17 KEQDRFLPIANISRIMRRAVPENGKIAKDAKDSVQECVSEFISFITSE 64
               89********************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.8E-231464IPR009072Histone-fold
SuperFamilySSF471135.03E-161664IPR009072Histone-fold
PfamPF008087.3E-172264IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 64 aa     Download sequence    Send to blast
MSEGDYTLEG GSGAGGKEQD RFLPIANISR IMRRAVPENG KIAKDAKDSV QECVSEFISF  60
ITSE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B1e-221764249Transcription factor HapC (Eurofung)
4g92_B1e-221764249Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. May regulate the expression of photosynthetic genes, and may be involved in chloroplast and amyloplast development. {ECO:0000269|PubMed:14617083}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462901191
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1042843e-67AC104284.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1735_C10, complete sequence.
GenBankAP0149613e-67AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126133e-67CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805143.12e-28nuclear transcription factor Y subunit B-4-like
RefseqXP_025805144.12e-28nuclear transcription factor Y subunit B-4-like
SwissprotQ65XK17e-26NFYB4_ORYSJ; Nuclear transcription factor Y subunit B-4
TrEMBLA0A0A9PIF86e-28A0A0A9PIF8_ARUDO; Uncharacterized protein
STRINGPavir.J18451.1.p3e-28(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1875059
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38880.69e-28nuclear factor Y, subunit B1
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]