PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462901741
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family Whirly
Protein Properties Length: 129aa    MW: 14253.3 Da    PI: 11.3567
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462901741genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly215.6e-076391111139
     Whirly 111 vtnslvkgnesfsvPvskaefavlrsllv 139
                v n+l+k+ +++svP++kaefavlr++l+
  462901741  63 VLNNLQKTTDRLSVPITKAEFAVLRTALS 91 
                678899********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF085362.3E-46288IPR013742Plant transcription factor
Gene3DG3DSA:2.30.31.106.1E-1562110IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544472.35E-1862129IPR009044ssDNA-binding transcriptional regulator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
ALFSSRRSER TRSLPPSPAL ASLSSGHLCG DQQGGGTMLR LSRLLPTASR RGIELKDALW  60
SAVLNNLQKT TDRLSVPITK AEFAVLRTAL SFALPHIMGW DQVLTNHHPA PQASKPRVER  120
PHPDSEWER
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3n1h_A1e-1462106125168StWhy2
3n1i_A1e-1462106125168protein StWhy2
3n1j_A1e-1462106125168Protein StWhy2
3n1k_A1e-1462106125168protein StWhy2
3n1l_A1e-1462106125168protein StWhy2
3r9y_A1e-1462106125168Why2 protein
3r9z_A1e-1462106125168Why2 protein
3ra0_A1e-1462106125168Why2 protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462901741
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004951836.13e-36single-stranded DNA-binding protein WHY2, mitochondrial
SwissprotD9J0343e-15WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBLA0A0A9CVM84e-37A0A0A9CVM8_ARUDO; Uncharacterized protein
STRINGPavir.Ab00418.1.p1e-35(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30123885
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.13e-15WHIRLY 2