PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462902261
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ERF
Protein Properties Length: 104aa    MW: 11571.3 Da    PI: 11.45
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462902261genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.33.8e-182675255
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               +y+GVr +k +g+Wv+eIr p   g ++r++lg+f +ae+Aa a++ a+++l+g
  462902261 26 QYRGVRKRK-WGKWVSEIRQP---GTKTRIWLGSFESAEMAAVAHDVAALRLRG 75
               69****999.**********8...325*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.7E-352689IPR001471AP2/ERF domain
PROSITE profilePS5103223.5122683IPR001471AP2/ERF domain
SuperFamilySSF541712.75E-222684IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.1E-322683IPR001471AP2/ERF domain
PfamPF008479.9E-122775IPR001471AP2/ERF domain
CDDcd000182.40E-302783No hitNo description
PRINTSPR003672.8E-102738IPR001471AP2/ERF domain
PRINTSPR003672.8E-104965IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 104 aa     Download sequence    Send to blast
MEQMAATDMF QLLPPTITGQ PQQQQQYRGV RKRKWGKWVS EIRQPGTKTR IWLGSFESAE  60
MAAVAHDVAA LRLRGRDAQL NFPGSIALTG GRPGISARFY LAAV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-182583160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A5e-182583463ATERF1
3gcc_A5e-182583463ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462902261
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9581351e-89EU958135.1 Zea mays clone 1674836 dehydration-responsive element-binding protein 1D mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001355763.18e-36dehydration-responsive element-binding protein 1D
SwissprotQ9C9I24e-29ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLA0A3B6CA296e-36A0A3B6CA29_WHEAT; Uncharacterized protein
TrEMBLA0A446ME016e-36A0A446ME01_TRITD; Uncharacterized protein
STRINGTraes_2BL_9CD6E043A.24e-38(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22443389
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.14e-23ERF family protein