PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462902497

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

GRAS

Protein Properties

Length: 700aa MW: 80104.3 Da PI: 6.6561

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462902497	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	349.7	4.7e-107	321	692	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 l++lL++cA+avs ++++la+ +L+++++++s +gd qRl ++++ L+ rla+++s++y++l +++++ + l++++l ++P+l + + N+ 462902497 321 LRTLLIHCAQAVSVNNHTLARDILNTIRQHSSASGDDSQRLSFCLADCLEVRLAGTGSQIYHKLISETKT---AGDMLKVFHLCLSICPFLWAPYYLSNK 417 6789********************************************************99888887...89999****************** PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198 +Il+ ge r+HiiDf+i G+QWp+L+++L++R+ gpp++RiTg++ p++g ++++ +tg+rLa++Ae +++pfe++ +++++e++++e++++k+ 462902497 418 TILDVSMGEPRLHIIDFGICFGFQWPSLFEQLSKREYGPPKVRITGIELPQPGfrPNRMTMNTGRRLAEYAEMFNIPFEYQG-MSSKWETIRVEDFDIKK 516 *************************************************999999*********************.8************ PP GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298 +++l+Vn+++++++l de+vs++s+r++vL++++ ++Pkv+v+ q+ +++++ Fl+rf e +++ysa+fd l++++p+++e+r+ +Ere+ + + nv+ 462902497 517 DDVLIVNCIYRMKNLGDETVSINSARNRVLNTIRMMKPKVFVHGVQNGSYSTPFFLTRFKEVMYHYSAMFDILNKTVPPDNEARMILEREIHKSVLLNVI 616 **************************************************************************************9999999* PP GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 aceg+er+er e+++kW++r +aGF+++pl+ +++k k ++++ + + y v+e++++l+ gWk+r ++++S W+ 462902497 617 ACEGSERIERPESYKKWKARNLKAGFEQIPLNPDIVKRTKDIVKRLYHKDYVVDEDDQWLLYGWKGRIIYAISTWK 692 *********************************************888***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	60.429	295	672	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.6E-104	321	692	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 700 aa Download sequence Send to blast
MLNTPGSYDS SQTFIDTTNE SNSLGLFLHP PSSINYYPPT APSTFNNDGN VASNTSSSSK 60 IYDLQFCKHG GNVTPDWNVT SAADYHEQSW FNSDITLNYI NNLLMQEDPQ LHHGESALRA 120 MEEPFYRLLE QNQQAYPQLR ALLSCDYLKN LDDSTSKTRW ELCSSYSVTT DSGNNHSNDN 180 LQGPETPWSL SAIVGETKKF TQDTYSRNLG LNVSDLSIAE NSSSGDQYVQ RRKSYPYTED 240 FDLLEGRSNK QFAFSLDEPI RDEMFDKVLL YSGHQPLDGG ILLQETTETK STENLQNNQG 300 RTSAWRKIKG KKQLKKEVVD LRTLLIHCAQ AVSVNNHTLA RDILNTIRQH SSASGDDSQR 360 LSFCLADCLE VRLAGTGSQI YHKLISETKT AGDMLKVFHL CLSICPFLWA PYYLSNKTIL 420 DVSMGEPRLH IIDFGICFGF QWPSLFEQLS KREYGPPKVR ITGIELPQPG FRPNRMTMNT 480 GRRLAEYAEM FNIPFEYQGM SSKWETIRVE DFDIKKDDVL IVNCIYRMKN LGDETVSINS 540 ARNRVLNTIR MMKPKVFVHG VQNGSYSTPF FLTRFKEVMY HYSAMFDILN KTVPPDNEAR 600 MILEREIHKS VLLNVIACEG SERIERPESY KKWKARNLKA GFEQIPLNPD IVKRTKDIVK 660 RLYHKDYVVD EDDQWLLYGW KGRIIYAIST WKPNAPNDGN

Sequence ? help Back to Top

Protein Sequence Length: 700 aa Download sequence Send to blast

MLNTPGSYDS SQTFIDTTNE SNSLGLFLHP PSSINYYPPT APSTFNNDGN VASNTSSSSK  60
IYDLQFCKHG GNVTPDWNVT SAADYHEQSW FNSDITLNYI NNLLMQEDPQ LHHGESALRA  120
MEEPFYRLLE QNQQAYPQLR ALLSCDYLKN LDDSTSKTRW ELCSSYSVTT DSGNNHSNDN  180
LQGPETPWSL SAIVGETKKF TQDTYSRNLG LNVSDLSIAE NSSSGDQYVQ RRKSYPYTED  240
FDLLEGRSNK QFAFSLDEPI RDEMFDKVLL YSGHQPLDGG ILLQETTETK STENLQNNQG  300
RTSAWRKIKG KKQLKKEVVD LRTLLIHCAQ AVSVNNHTLA RDILNTIRQH SSASGDDSQR  360
LSFCLADCLE VRLAGTGSQI YHKLISETKT AGDMLKVFHL CLSICPFLWA PYYLSNKTIL  420
DVSMGEPRLH IIDFGICFGF QWPSLFEQLS KREYGPPKVR ITGIELPQPG FRPNRMTMNT  480
GRRLAEYAEM FNIPFEYQGM SSKWETIRVE DFDIKKDDVL IVNCIYRMKN LGDETVSINS  540
ARNRVLNTIR MMKPKVFVHG VQNGSYSTPF FLTRFKEVMY HYSAMFDILN KTVPPDNEAR  600
MILEREIHKS VLLNVIACEG SERIERPESY KKWKARNLKA GFEQIPLNPD IVKRTKDIVK  660
RLYHKDYVVD EDDQWLLYGW KGRIIYAIST WKPNAPNDGN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	3e-40	327	695	24	381	Protein SCARECROW
5b3h_D	3e-40	327	695	24	381	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462902497

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022685405.1	0.0	scarecrow-like protein 9
Swissprot	O80933	1e-147	SCL9_ARATH; Scarecrow-like protein 9
TrEMBL	K4ALU3	0.0	K4ALU3_SETIT; Uncharacterized protein
STRING	Si039877m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11788	26	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-150	GRAS family protein