PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462902599

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

Protein Properties

Length: 129aa MW: 14577.6 Da PI: 4.8671

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462902599	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	59.3	6.6e-19	11	84	14	89
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 +++ +p +f++e+ +++k++tl d++g+ Wev++ y+++++ +++GW eF+ n+L+ D++vF+l ++++ 462902599 11 AQINIPSEFVREYLP--QSGKKMTLWDPQGKPWEVQYVYNNQRSIAAFSGGWGEFAVGNNLEKFDVCVFELLNEDN 84 6789*******63..47789*****************99***********************876544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	13.084	1	93	IPR003340	B3 DNA binding domain
CDD	cd10017	5.01E-23	4	91	No hit	No description
SMART	SM01019	1.9E-10	5	93	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	1.33E-20	6	91	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	2.2E-22	7	91	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	1.4E-16	10	88	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 129 aa Download sequence Send to blast
MEEATDSCLL AQINIPSEFV REYLPQSGKK MTLWDPQGKP WEVQYVYNNQ RSIAAFSGGW 60 GEFAVGNNLE KFDVCVFELL NEDNIKAHIY RIVLQITPLL CNKSIQPLAS NCISIGRQEG 120 EKFIHGLNG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462902599

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025827675.1	3e-43	B3 domain-containing protein Os11g0197600-like
Refseq	XP_025827676.1	3e-43	B3 domain-containing protein Os11g0197600-like
Swissprot	Q2R9D2	9e-43	Y1176_ORYSJ; B3 domain-containing protein Os11g0197600
TrEMBL	A0A0A9IA08	3e-42	A0A0A9IA08_ARUDO; Uncharacterized protein
TrEMBL	A0A0A9NR78	3e-42	A0A0A9NR78_ARUDO; Uncharacterized protein
TrEMBL	A0A2S3ID18	6e-42	A0A2S3ID18_9POAL; Uncharacterized protein
TrEMBL	A0A2T7CLC4	6e-42	A0A2T7CLC4_9POAL; Uncharacterized protein
TrEMBL	A0A3L6PN77	5e-42	A0A3L6PN77_PANMI; B3 domain-containing protein
STRING	Pavir.Ha01581.1.p	3e-42	(Panicum virgatum)
STRING	Pavir.J23006.1.p	8e-44	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4461	37	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42700.1	5e-09	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]