PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462902819
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 230aa    MW: 25141.2 Da    PI: 7.4553
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462902819genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.71.1e-14120170154
                CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                +rr+h ++Er+RR+++N+ ++ Lr+++P++   ++++ + a+i+  A++Y+k++
  462902819 120 QRRNHIAVERNRRRQMNEYLAVLRSVMPPS---YAQRGDQASIVAGAINYVKEM 170
                79****************************...*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.40E-15118175No hitNo description
PROSITE profilePS5088815.682119170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.64E-18119189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.6E-12120170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-15120186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-10125176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MALEAVVFSQ EHLTCTAKMA VAAHSESPSC GIDIDEFEDK GGVVLQEDQA DALLLHGVGA  60
ATTWDAAALC RPCSIAPGAV EERWDVVENR SVSPAPAPVA SRRRRRRPKA VKNKEEVENQ  120
RRNHIAVERN RRRQMNEYLA VLRSVMPPSY AQRGDQASIV AGAINYVKEM EQLLQSLEAQ  180
KRSVQRPEQL AAAPPFAGFF TFPQYSTGAT GVPGDSSDNG GDVQRRATRT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1101106RRRRRR
2121131RNHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMap462902819
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0605124e-94BT060512.1 Zea mays full-length cDNA clone ZM_BFb0009D23 mRNA, complete cds.
GenBankEU9660024e-94EU966002.1 Zea mays clone 290696 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953984.18e-81transcription factor bHLH94
TrEMBLA0A0A9FQM14e-97A0A0A9FQM1_ARUDO; Uncharacterized protein
STRINGPavir.Aa00538.1.p9e-96(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104622843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22490.11e-34bHLH family protein