PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462902948
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ERF
Protein Properties Length: 208aa    MW: 22649.6 Da    PI: 11.0606
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462902948genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.71.6e-1955105155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                + ++GVr++  +g+WvAeIr+p   + r +r +lg+f ta eAa+a++aa+++l+g
  462902948  55 CPFRGVRQRT-WGKWVAEIREP---N-RgARLWLGTFATALEAARAYDAAARALYG 105
                679****999.**********8...3.35***********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003804.6E-3056119IPR001471AP2/ERF domain
PROSITE profilePS5103220.62656113IPR001471AP2/ERF domain
SuperFamilySSF541716.34E-2057113IPR016177DNA-binding domain
PfamPF008474.5E-1357105IPR001471AP2/ERF domain
PRINTSPR003671.0E-95768IPR001471AP2/ERF domain
CDDcd000184.67E-1757111No hitNo description
Gene3DG3DSA:3.30.730.101.3E-2857112IPR001471AP2/ERF domain
PRINTSPR003671.0E-97995IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MELQQQMMVS QNHHQNQMMN SKESNKVGGS RKCCPLRRSR KGCMKGKGGP ENQQCPFRGV  60
RQRTWGKWVA EIREPNRGAR LWLGTFATAL EAARAYDAAA RALYGDCARL NLGAQPRLVA  120
HQINIPPDPS PTAALSSCCS GDDSNSNSNS NSSASPTPPP PHTSRGCPRP RTLASRASLR  180
GRGALRRLRP TQPWSSAAPC CPPNQYSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-14531121171Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462902948
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9520583e-91EU952058.1 Zea mays clone 1066007 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D9X8381e-50A0A0D9X838_9ORYZ; Uncharacterized protein
STRINGLPERR08G12790.12e-51(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55103454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40350.12e-29ERF family protein