PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462903181
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family BBR-BPC
Protein Properties Length: 281aa    MW: 30913.1 Da    PI: 10.6354
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462903181genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind454.2e-141116187
  GAGA_bind   1 mdddgsre.rnkgyyepaaslkenlglqlmssia.erdaki.............rernlalsekkaavaerd................maflqrdkalae 69 
                mdddgs   rn+g+ye     k nlglqlmss++ +rd+k+             +++    +++++++++rd                m+f++++++l  
  462903181   1 MDDDGSLGiRNWGFYETV---KGNLGLQLMSSVTsDRDTKPllpnggtflqhhgHHNAPHQHHPQHSHHPRDcggasggmpnepssvhMDFVRNEAWLLP 97 
                9*****999******988...************99****************855333333566778889999*************************987 PP

  GAGA_bind  70 .rnkalverdnkllalllv 87 
                 ++++ ++r++k+l+ l+v
  462903181  98 sQHQHQHPRQQKVLHHLPV 116
                588999*******998876 PP
2GAGA_bind275.13.5e-84130278151300
  GAGA_bind 151 kkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkr 250
                +krq++++pk++k kk+kk   +++++ ++++  +r + ++k +++v+ng++lD s++P+PvCsCtG+++qCY+WG+GGWqSaCCtt+iS+yPLP+stkr
  462903181 130 HKRQQNRQPKTPKPKKPKK-VVAPREDGEPNRPASRGRGPRKAVGMVINGIDLDLSRIPTPVCSCTGTPQQCYRWGAGGWQSACCTTSISTYPLPMSTKR 228
                57899**************.557878888888779***************************************************************** PP

  GAGA_bind 251 rgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvti 300
                rgaRiagrKmSqgafkk+LekLa+eGy+l+np+DLk++WAkHGtnkfvti
  462903181 229 RGARIAGRKMSQGAFKKVLEKLAGEGYNLNNPIDLKTFWAKHGTNKFVTI 278
                *************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062178.1E-171118IPR010409GAGA-binding transcriptional activator
SMARTSM012263.3E-1561279IPR010409GAGA-binding transcriptional activator
PfamPF062171.4E-86129278IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MDDDGSLGIR NWGFYETVKG NLGLQLMSSV TSDRDTKPLL PNGGTFLQHH GHHNAPHQHH  60
PQHSHHPRDC GGASGGMPNE PSSVHMDFVR NEAWLLPSQH QHQHPRQQKV LHHLPVGPVG  120
HVGHPGHGGH KRQQNRQPKT PKPKKPKKVV APREDGEPNR PASRGRGPRK AVGMVINGID  180
LDLSRIPTPV CSCTGTPQQC YRWGAGGWQS ACCTTSISTY PLPMSTKRRG ARIAGRKMSQ  240
GAFKKVLEKL AGEGYNLNNP IDLKTFWAKH GTNKFVTISC L
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142148PKKPKKV
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Positively regulates the homeotic gene BKN3. {ECO:0000269|PubMed:12795701}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462903181
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0999331e-137FP099933.1 Phyllostachys edulis cDNA clone: bphyem110m15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001152265.11e-122uncharacterized protein LOC100285904
SwissprotQ8GUC31e-117BBR_HORVU; Protein Barley B recombinant
TrEMBLA0A3B6HR631e-121A0A3B6HR63_WHEAT; Uncharacterized protein
TrEMBLA0A446QQ331e-121A0A446QQ33_TRITD; Uncharacterized protein
STRINGPavir.Bb00953.1.p1e-120(Panicum virgatum)
STRINGTraes_4AS_48979CBE1.21e-122(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22113697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14685.32e-61basic pentacysteine 2