PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462903292
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB_related
Protein Properties Length: 303aa    MW: 33249.5 Da    PI: 6.1856
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462903292genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.18.6e-13555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     ++rWT+eE+  l  +++++G g+W+tI + +        R+  ++k++w++
        462903292  5 KQRWTPEEEAALRAGIARHGVGNWRTILKDLEfsstlRYRSNVDIKDKWRN 55
                     79***********************************99***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.088161IPR017930Myb domain
SuperFamilySSF466891.65E-15259IPR009057Homeodomain-like
SMARTSM007178.6E-10459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.2E-14556IPR009057Homeodomain-like
PfamPF002491.4E-10556IPR001005SANT/Myb domain
CDDcd116601.08E-19657No hitNo description
SuperFamilySSF467858.16E-16119200IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005262.3E-11120185IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.105.1E-16121190IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150423.013122190IPR005818Linker histone H1/H5, domain H15
PfamPF005387.1E-10127183IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MGVPKQRWTP EEEAALRAGI ARHGVGNWRT ILKDLEFSST LRYRSNVDIK DKWRNMNLFV  60
NTSGSREKAK AVVKKTKGAP KSNDQSTTIS TATLDGEEEA VDAKHIAPVS NEAWNPLIPK  120
KSQLRLDNII MEAVKNLNDP AGSHRTTIAN YIEEQYWPPS DFDHLLSATL KELAASGKLI  180
KVNRKYRIAP CSPYSESEGR QPKMLLLEDI QRESLKLGSD DSKTLTRTQV DAELALMATM  240
TPEEAAAAAA RAVEEAEAIL AEAEAAAREA EAAEADAQAA QAFAEAALMT FKNRNTAKLM  300
GQS
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462903292
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817366.11e-132single myb histone 5-like
RefseqXP_025817367.11e-132single myb histone 5-like
RefseqXP_025817368.11e-132single myb histone 5-like
SwissprotC0HIA31e-120SMH6_MAIZE; Single myb histone 6
TrEMBLA0A2T7DRF91e-131A0A2T7DRF9_9POAL; Uncharacterized protein
STRINGPavir.Ia01166.1.p1e-129(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132438110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.32e-61telomere repeat binding factor 1
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]