PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462903569
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family NF-YB
Protein Properties Length: 201aa    MW: 21796.2 Da    PI: 4.6265
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462903569genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB52.61.1e-1668166697
      NF-YB   6 rflPianvsrimkkvlPana.......kiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 
                ++lP a v r++k  l + a        + kda     e +  fi ++++ a+d c++ kr+tin+dd+l al ++ f ++vepl + l+++r+ +++k
  462903569  68 EELPKAIVRRLVKDKLAQIAggdgaevIVNKDAMAAFAESARIFIHYLSATANDMCKESKRQTINADDVLKALDEMEFSEFVEPLGTSLQEFRNKNADK 166
                679999999999998875431222222589***************************************************************998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.1E-3364198IPR009072Histone-fold
PfamPF008085.9E-1069140IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471131.18E-2670194IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
PNLLGFAVCA SSVPFITTAT TSSSRAQEWG TMAGEATKES EPQPQAAQAQ DKTAPAPASA  60
PMTEAEVEEL PKAIVRRLVK DKLAQIAGGD GAEVIVNKDA MAAFAESARI FIHYLSATAN  120
DMCKESKRQT INADDVLKAL DEMEFSEFVE PLGTSLQEFR NKNADKRSEA NKKQKEKRRK  180
LNEEATPHQE NDAADDAENG N
Cis-element ? help Back to Top
SourceLink
PlantRegMap462903569
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0605591e-133BT060559.1 Zea mays full-length cDNA clone ZM_BFb0015O22 mRNA, complete cds.
GenBankEU9626971e-133EU962697.1 Zea mays clone 244791 DNA polymerase epsilon subunit 3 mRNA, complete cds.
GenBankEU9640461e-133EU964046.1 Zea mays clone 275447 DNA polymerase epsilon subunit 3 mRNA, complete cds.
GenBankKJ7283011e-133KJ728301.1 Zea mays clone pUT6581 CCAAT-DR1 transcription factor (CADR16) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801207.15e-82DNA polymerase epsilon subunit 3
TrEMBLA0A0A9GDS43e-85A0A0A9GDS4_ARUDO; Uncharacterized protein
STRINGPavir.Bb01701.1.p4e-78(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104143744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.12e-36nuclear factor Y, subunit B11