PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462903892
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB_related
Protein Properties Length: 308aa    MW: 33079.4 Da    PI: 9.3694
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462903892genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.71.3e-0878113138
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlk 38 
                      r +WT+ E++++++a +++  + Wk+I +++g  +t  
        462903892  78 RESWTEPEHDKFLEALQLFDRD-WKKIEAYVG-SKTVI 113
                      789*****************77.*********.55543 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.43E-1372135IPR009057Homeodomain-like
PROSITE profilePS512949.8273134IPR017930Myb domain
TIGRFAMsTIGR015576.6E-1576132IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.603.9E-476135IPR009057Homeodomain-like
SMARTSM007174.5E-477132IPR001005SANT/Myb domain
PfamPF002491.4E-678112IPR001005SANT/Myb domain
CDDcd001671.92E-580130No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MVSMSTTPKP LDAAKAAAVA GGGGGVDEGG GGGGKQQRMR GGMVPMAPPP MAVPAPAPAP  60
AGEEVRKVRK PYTITKSRES WTEPEHDKFL EALQLFDRDW KKIEAYVGSK TVIQQKCSFC  120
QIRSHAQKYF LKVQKNGTGE HLPPPRPKRK AAHPYPQKAS KNVSQAVSSQ QLPLRDQGAV  180
MSMDTSNVIR SANANGAGTS WDNGLVQPFG ASQGAVGTNN CSSSIESPSG TWPTSEAVEQ  240
ENVVPPLRAM PDFARVYSFL GSIFDPDTSG HLQRLKAMDP IDVETVLLLM RNLSTNLTSP  300
DFEEHGNK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00625PBMTransfer from PK02532.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462903892
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812931.11e-164protein REVEILLE 6-like
SwissprotQ8H0W38e-89RVE6_ARATH; Protein REVEILLE 6
TrEMBLA0A2T7DVG31e-165A0A2T7DVG3_9POAL; Uncharacterized protein
STRINGPavir.Da00204.1.p1e-162(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109638111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.23e-77MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]