PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462903983
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family NAC
Protein Properties Length: 178aa    MW: 20170 Da    PI: 10.1012
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462903983genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM107.81.3e-33141541128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkk...lelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk......sgyW 83 
                lp+G++F+Ptd+el+ e+L+ k++ +    +           +i+   +i++++P++Lp  v ++    +fF++ +k+y+tg+rk+r+++      + +W
  462903983  14 LPAGVKFDPTDQELL-EHLEGKARPDAhklH---PlvdefipTIEGEnGICYTHPERLP-GVGKDGLIRHFFHRPSKAYTTGTRKRRKVHtdeqggETRW 108
                799************.99****998884451...233444333665557**********.555555677******************744456555778* PP

        NAM  84 katgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                ++tgk+++v++ +g+l+g kk+Lv+y   g+++k+ekt+Wvmh+y+l
  462903983 109 HKTGKTRPVFA-NGKLKGYKKILVLYtnYGKQRKPEKTNWVMHQYHL 154
                ***********.999***********6657999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.05E-375171IPR003441NAC domain
PROSITE profilePS5100531.76814173IPR003441NAC domain
PfamPF023657.7E-1615154IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MLTAAATIQD LPGLPAGVKF DPTDQELLEH LEGKARPDAH KLHPLVDEFI PTIEGENGIC  60
YTHPERLPGV GKDGLIRHFF HRPSKAYTTG TRKRRKVHTD EQGGETRWHK TGKTRPVFAN  120
GKLKGYKKIL VLYTNYGKQR KPEKTNWVMH QYHLGSDEEE KDGELVVSKV AAAGRRRQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462903983
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1027940.0AK102794.1 Oryza sativa Japonica Group cDNA clone:J033108B03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814631.11e-120NAC domain-containing protein 73-like isoform X1
SwissprotO494591e-101NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A2T7DIP11e-119A0A2T7DIP1_9POAL; Uncharacterized protein
STRINGPavir.J05241.1.p1e-120(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30753786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-104NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]