PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462904330
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB_related
Protein Properties Length: 142aa    MW: 16044.1 Da    PI: 9.0071
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462904330genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.74.9e-1790135148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++TteE+  +++++   G++ W+ Ia+ ++ gRt++++k++w+++l
        462904330  90 RGPFTTEEHNTILQLHGIVGNK-WSMIAAQLP-GRTDNEIKNYWNTHL 135
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.2867084IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.3E-127097IPR009057Homeodomain-like
SuperFamilySSF466891.55E-2370139IPR009057Homeodomain-like
PROSITE profilePS5129426.66985139IPR017930Myb domain
SMARTSM007171.4E-1489137IPR001005SANT/Myb domain
PfamPF002491.4E-1490135IPR001005SANT/Myb domain
CDDcd001674.14E-1192135No hitNo description
Gene3DG3DSA:1.10.10.602.5E-2298136IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MGTCCSSGRR ARVEQDRTSA RDFLGSREGT LGEATHRVLH DDDGHRADDV PGVLGLFISV  60
VEVVFRAGLN RCGKSCRLRW TNYLRPDIKR GPFTTEEHNT ILQLHGIVGN KWSMIAAQLP  120
GRTDNEIKNY WNTHLKKQLS QE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-207113940108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462904330
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1086211e-80AK108621.1 Oryza sativa Japonica Group cDNA clone:002-147-D04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825374.11e-47transcription factor MYB41-like
SwissprotQ9FJP25e-40MYB53_ARATH; Transcription factor MYB53
TrEMBLA0A2S3I8U34e-46A0A2S3I8U3_9POAL; Uncharacterized protein
TrEMBLA0A2T7CXW34e-46A0A2T7CXW3_9POAL; Uncharacterized protein
STRINGPavir.Ga01101.1.p1e-46(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65230.12e-42myb domain protein 53
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]