PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462904540
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 336aa    MW: 36358 Da    PI: 4.6289
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462904540genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.15.5e-12174216754
                HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
        HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  462904540 174 MAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYVKEL 216
                79*********************66......****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.351167216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.02E-16171237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-12173222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-15174234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-9174216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.97E-5180221No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MELDEETFLD ELMSLRREAS SSAPWQAYPV GGGGVMMSDL LFYGGGEGGA DTRSDMDLSP  60
FQGLVPVPAP PLPHPHEAEF NFDCLSEVCN PYRSSLAVPG GEPAAGGQTL TALHDAAMAE  120
EETSGDKGQY GGGVSPTFVF GGGAGQSSEM AGIRGYAGAH HRSKIHGAPS KNLMAERRRR  180
KRLNDRLSML RSIVPKISKM DRTSILGDTI DYVKELTERI KVLEQEIGAS PEDLNLLNTL  240
NDPSNNNSEM MVRNSTKFDV DRRGNGSTRI EICCPANPGV LLSTVSALEV LGLEIEQCVV  300
SCFSDFGMQA SCLQERFVQF YLVLELPYAP MANSRV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1175182ERRRRKRL
Cis-element ? help Back to Top
SourceLink
PlantRegMap462904540
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9647151e-138EU964715.1 Zea mays clone 281052 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985797.11e-173transcription factor bHLH61
TrEMBLK4AC631e-172K4AC63_SETIT; Uncharacterized protein
STRINGSi036470m1e-173(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13023799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.11e-54beta HLH protein 93