PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462904549
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ERF
Protein Properties Length: 163aa    MW: 16551.2 Da    PI: 4.7067
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462904549genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2491.5e-1523631356
        AP2 13 grWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkklege 56
               gr++AeIrd +     r +r++lg+f+t+eeAa a++aa++kl+g+
  462904549 23 GRYAAEIRDpV-----RkARVWLGTFDTPEEAALAYDAAARKLRGP 63
               9********44.....55**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103218.215870IPR001471AP2/ERF domain
SMARTSM003802.0E-212076IPR001471AP2/ERF domain
SuperFamilySSF541712.75E-172272IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.6E-222371IPR001471AP2/ERF domain
PfamPF008475.9E-92362IPR001471AP2/ERF domain
CDDcd000188.69E-132372No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MAPRRSTSPA GSSGERAAAS AGGRYAAEIR DPVRKARVWL GTFDTPEEAA LAYDAAARKL  60
RGPGAATNYP VSTAPASGGS DAVISEPSST TSSSSSSRGS LAVLAASVAP ALIQFLPLKS  120
EEEEQSESAS SSFFSSATND DKSAPAVSLG LDLNLTWPAQ VMA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-1323731566ATERF1
3gcc_A1e-1323731566ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462904549
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4937231e-37AM493723.1 Saccharum officinarum mRNA for ethylene responsive transcription factor (ERF3 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004972568.16e-31ethylene-responsive transcription factor 11
TrEMBLK3YJQ51e-29K3YJQ5_SETIT; Uncharacterized protein
STRINGSi014474m2e-30(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144461025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20310.15e-11ethylene response factor 7