PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462904621
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family YABBY
Protein Properties Length: 177aa    MW: 18765.7 Da    PI: 6.6372
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462904621genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY84.92.2e-26201435116
      YABBY   5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee.........lleelkveeenlksnvekeesasts 95 
                s +eq+Cyv+Cn C+tilav vP +slfk+vtvrCGhC++llsvnl       aa    + ++ ++         ll+el  +  +l + +++ +++ +s
  462904621  20 SPTEQLCYVHCNCCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLCGLLLPPAAPPANQLNFGQSllsptsphgLLDELALQAPSLLMEQQAASANLSS 119
                578*******************************************999965555554445555444455777787777777777766666555555444 PP

      YABBY  96 vssekl...senedeevprvppvi 116
                +++ +     +n    +p +ppv 
  462904621 120 ITNRSYsscASNVPAAAPTMPPVK 143
                444433222344444455555543 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046902.1E-2721159IPR006780YABBY protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MMSSSSSSSA AFPLDHLAPS PTEQLCYVHC NCCDTILAVG VPCSSLFKTV TVRCGHCANL  60
LSVNLCGLLL PPAAPPANQL NFGQSLLSPT SPHGLLDELA LQAPSLLMEQ QAASANLSSI  120
TNRSYSSCAS NVPAAAPTMP PVKLPVQHEP ELQTKSVPSV NRRKYLVSFF LELFDLL
Functional Description ? help Back to Top
Source Description
UniProtSeems to be associated with phloem cell differentiation. {ECO:0000269|PubMed:17676337}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462904621
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2740161e-126AB274016.1 Oryza sativa Japonica Group OsYABBY4 mRNA for OsYABBY4 protein, complete cds.
GenBankAK1067841e-126AK106784.1 Oryza sativa Japonica Group cDNA clone:002-115-H10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020155220.16e-75protein YABBY 4-like isoform X1
SwissprotA2X7Q32e-60YAB4_ORYSI; Protein YABBY 4
SwissprotQ6H6682e-60YAB4_ORYSJ; Protein YABBY 4
TrEMBLA0A3B6QIL11e-73A0A3B6QIL1_WHEAT; Uncharacterized protein
TrEMBLA0A453P6431e-73A0A453P643_AEGTS; Uncharacterized protein
TrEMBLA0A453P6579e-74A0A453P657_AEGTS; Uncharacterized protein
STRINGTraes_6DL_59DB06B9F.12e-74(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144538121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00180.11e-19YABBY family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang C,Ma Y,Li J
    The rice YABBY4 gene regulates plant growth and development through modulating the gibberellin pathway.
    J. Exp. Bot., 2016. 67(18): p. 5545-5556
    [PMID:27578842]