PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462904627
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family WRKY
Protein Properties Length: 560aa    MW: 59639.5 Da    PI: 4.8254
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462904627genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.22.3e-30309368159
                ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                ++Dg++WrKYGqK+ kg+++pr+YYrCt a gCpv+k+v+r+ ed +++++tYeg+Hnh+
  462904627 309 MNDGCQWRKYGQKVAKGNPCPRAYYRCTVApGCPVRKQVQRCLEDMSILVTTYEGTHNHP 368
                58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-31294370IPR003657WRKY domain
SuperFamilySSF1182902.88E-27302370IPR003657WRKY domain
PROSITE profilePS5081128.529304370IPR003657WRKY domain
SMARTSM007741.4E-37309369IPR003657WRKY domain
PfamPF031061.0E-26310368IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MSSKKKRAAI DLSLEVVEQR EDDRSIGGDG DGDGRSKDGE KDKQERQLIK EQGKAPNEET  60
KEEKLVEVVV DQGGEVSKEE IKYGTQPGEE MEVDKQSAEE GDGDDESHGS ETRAEDKHVV  120
EAAGNSDDGD NHNSMEQDEV SAMQEEMEKM KEENQMLRRV VDRTVRDYYE LQMKLAAYQQ  180
QPADEPKEPE VFLSLGASAT ATGGFPEPKR KEQVTRRPSL SSDDTDDGKG DLGLSLSLGS  240
YEEEKLDQAA HDHDGDGRAK GAYALLESSK LGPPVAGDLA AAGITSQSVN PANRKTRVSV  300
RVRCQGPTMN DGCQWRKYGQ KVAKGNPCPR AYYRCTVAPG CPVRKQVQRC LEDMSILVTT  360
YEGTHNHPLP VGATAMASTT SAAATFMLLS STSSSSSISD AGGATAAPPY LSPYMLNSTS  420
HHSSASPFLS TPSSMPGASA GSSGMQHLNL FGHSSMLGAQ QAPHLNKYPW SSPSTHGTGN  480
GLTTGGNRPF WSTGGSDDKA STLPDNVGAV VSDPGKFSVA IAAAINSFMG KDGQVVSSKD  540
GESSSKSSNK WGVVESLPPP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-213093701777Probable WRKY transcription factor 4
2lex_A3e-213093701777Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462904627
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3632474e-90AK363247.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2013L09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022681574.10.0probable WRKY transcription factor 9
TrEMBLK3YR970.0K3YR97_SETIT; Uncharacterized protein
STRINGSi016791m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80223446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.19e-51WRKY DNA-binding protein 9