PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462904885

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

Protein Properties

Length: 99aa MW: 11414.4 Da PI: 11.078

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462904885	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	51.1	2.5e-16	12	92	14	95
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEE CS B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvk 95 ++l l ++a++ +++ +++t++l+ + + W+ k+ +r +++r +l++GW++Fv++ngL+ gD+++++l+++ ++ ++ + 462904885 12 SMLELGSRYATAVHLPS-RGQTVVLKY-TRKIWKAKMVVRCGGRRQYLSGGWSKFVRDNGLRIGDICLLELKKNeRKLTMEAH 92 56677788888887775.555777665.88*****9999999999**********************987566665555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01019	6.2E-7	1	97	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.068	1	97	IPR003340	B3 DNA binding domain
CDD	cd10017	6.11E-18	1	96	No hit	No description
Gene3D	G3DSA:2.40.330.10	8.3E-17	2	92	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.44E-16	2	86	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	3.4E-14	12	93	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 99 aa Download sequence Send to blast
MSKSSVGDPQ RSMLELGSRY ATAVHLPSRG QTVVLKYTRK IWKAKMVVRC GGRRQYLSGG 60 WSKFVRDNGL RIGDICLLEL KKNERKLTME AHIIFREQF

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462904885

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025797620.1	7e-36	B3 domain-containing protein Os03g0619800-like isoform X3
Swissprot	Q6AV22	1e-25	Y3196_ORYSJ; B3 domain-containing protein Os03g0619600
TrEMBL	A0A0A8ZPI9	7e-40	A0A0A8ZPI9_ARUDO; Uncharacterized protein
TrEMBL	A0A0A9SJW4	2e-40	A0A0A9SJW4_ARUDO; Uncharacterized protein
STRING	Pavir.Ib02115.1.p	4e-35	(Panicum virgatum)
STRING	Pavir.Ib02116.1.p	2e-35	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP585	31	172

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G33280.1	8e-08	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]